Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003492`

染色体: Chr03 坐标: 53484523-53489495 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003492`
名称	SmilChr03G003492
描述	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	53484523 - 53489495 / `-`

ID 对照

NCBI Gene ID	`LOC131014380`
GeneID	`131014380`
locus_tag	`-`
NCBI Name	`LOC131014380`
原始查询	`SmilChr03G003492`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial
产物	2-methoxy-6-polyprenyl-1%2C4-benzoquinol methylase%2C mitochondrial
Arabidopsis	`AT5G57300` (AT5G57300) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835835] identity=74.4; qcov=1.01; evalue=1.66e-160; confidence=high
Rice	`Os01g0976600` (COQ5) - identity=72.4; qcov=1; evalue=5.83e-154; confidence=high
GO	GO:0005739 (mitochondrion); GO:0006744 (ubiquinone biosynthetic process); GO:0008168 (methyltransferase activity)
KEGG	smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF01209 (Ubie_methyltran); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:131014380

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057798321.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057798321.1`
3	Mitochondrion inner membrane	线粒体内膜	0.80000	`XP_057798321.1`
4	Nucleus	细胞核	0.00000	`XP_057798321.1`
5	Chromosome	染色体	0.00000	`XP_057798321.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:53484881`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A24,B114,B82,D6
`Chr3:53487431`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B102,B12,B55,C60,C8
`Chr3:53488400`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr3:53488616`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B63,B83
`Chr3:53488877`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798321.1

286 aa

143

286

Ubie_methyltran

Methyltransf_31

Methyltransf_12

Methyltransf_25

Methyltransf_11

PF01209 Ubie_methyltran 37-285 aa PF13847 Methyltransf_31 80-210 aa PF08242 Methyltransf_12 85-201 aa PF13649 Methyltransf_25 121-199 aa PF08241 Methyltransf_11 122-203 aa

XP_057798322.1

286 aa

143

286

Ubie_methyltran

Methyltransf_31

Methyltransf_12

Methyltransf_25

Methyltransf_11

PF01209 Ubie_methyltran 37-285 aa PF13847 Methyltransf_31 80-210 aa PF08242 Methyltransf_12 85-201 aa PF13649 Methyltransf_25 121-199 aa PF08241 Methyltransf_11 122-203 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798321.1`	Pfam	`PF01209`	Ubie_methyltran	Family	37	285	4.5e-86	288.7	ubiE/COQ5 methyltransferase family
`XP_057798321.1`	Pfam	`PF13847`	Methyltransf_31	Domain	80	210	8.6e-10	39.3	Methyltransferase domain
`XP_057798321.1`	Pfam	`PF08242`	Methyltransf_12	Domain	85	201	4.9e-09	37.5	Methyltransferase domain
`XP_057798321.1`	Pfam	`PF13649`	Methyltransf_25	Domain	121	199	3.9e-15	57.0	Methyltransferase domain
`XP_057798321.1`	Pfam	`PF08241`	Methyltransf_11	Domain	122	203	3.2e-16	60.5	Methyltransferase domain
`XP_057798322.1`	Pfam	`PF01209`	Ubie_methyltran	Family	37	285	4.5e-86	288.7	ubiE/COQ5 methyltransferase family
`XP_057798322.1`	Pfam	`PF13847`	Methyltransf_31	Domain	80	210	8.6e-10	39.3	Methyltransferase domain
`XP_057798322.1`	Pfam	`PF08242`	Methyltransf_12	Domain	85	201	4.9e-09	37.5	Methyltransferase domain
`XP_057798322.1`	Pfam	`PF13649`	Methyltransf_25	Domain	121	199	3.9e-15	57.0	Methyltransferase domain
`XP_057798322.1`	Pfam	`PF08241`	Methyltransf_11	Domain	122	203	3.2e-16	60.5	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942339.1
CTCGCGAGCCAGTCAGCCCAACCCATATGTAGTAAGTATTTCCTCAAACAGAAGAAATAAAATAACGGTTTCTAAGTGGCAGCCCACATCTCTTAGCCTGTTTTTAAACCACGGTAAACAACGAGAATAAAAAGGGAAAAAAAATCTGTAAGCTCCGACCCCGCAACAGCAGCTGCGCCGCCTCCGGCCTTTTCTCCCGTTGCGCCTCTATAAACAGATAATGGCGCATATTCTGAAATGGTTGAACTATGTATTATCTT...

XM_057942338.1
CTAATACCCGGGTATTAGGTACCTGATTTTAGAATCGGGTTTTTGGGTAGGGTATCGAATCCGAACCGATTCCCACTCCTAGAAAAAATTGCTGAAGATCGAAAATTTTCTATTGAGCCATCACCGTTACTGTAGGTATGGCGTTAAGATCGATTTACCGGGGCTTGAGGAAGAACAATTCGCGTTTGTGCTCTCATTTGCATTCTCATGCTACTAGTTTCGGATTTAAGGAAGTTAGGGAGGATGAGAAGAGTAGGATG...

CDS

2 records

下载 CDS FASTA

LOC131014380
ATGGCGTTAAGATCGATTTACCGGGGCTTGAGGAAGAACAATTCGCGTTTGTGCTCTCATTTGCATTCTCATGCTACTAGTTTCGGATTTAAGGAAGTTAGGGAGGATGAGAAGAGTAGGATGGTCGGCGATGTGTTCACAAGTGTAGCGTCAAATTATGATGTCATGAACGATTTAATGAGTGGTGGGCTGCATAGGTTGTGGAAAGAAAGGTTGGTTTCCAAGTTGAATCCATTTCCGGGAATGAAGCATCTTGATGT...

Protein

2 records

下载 Protein FASTA

XP_057798321.1
MALRSIYRGLRKNNSRLCSHLHSHATSFGFKEVREDEKSRMVGDVFTSVASNYDVMNDLMSGGLHRLWKERLVSKLNPFPGMKHLDVAGGTGDVAFRILDSIHSVTQRDVKNCHDNNLLEETQIFVCDINPNMLRVGKKRAHDRGFGEDKSLIWVEGDAEQLKFEDASMDGYTIAFGIRNVTHIEKALVEAYRVLKPGGRFLCLELSHVEIPIFKDLYDYYSFAVIPTVGQLVAGDRESYQYLVESIRRFPKQEKFAAMI...

XP_057798322.1
MALRSIYRGLRKNNSRLCSHLHSHATSFGFKEVREDEKSRMVGDVFTSVASNYDVMNDLMSGGLHRLWKERLVSKLNPFPGMKHLDVAGGTGDVAFRILDSIHSVTQRDVKNCHDNNLLEETQIFVCDINPNMLRVGKKRAHDRGFGEDKSLIWVEGDAEQLKFEDASMDGYTIAFGIRNVTHIEKALVEAYRVLKPGGRFLCLELSHVEIPIFKDLYDYYSFAVIPTVGQLVAGDRESYQYLVESIRRFPKQEKFAAMI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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