当前解析结果
SmilChr03G003523| 统一新 Gene ID | SmilChr03G003523 |
|---|---|
| 名称 | SmilChr03G003523 |
| 描述 | uncharacterized SmilChr03G003523 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 53840875 - 53843823 / - |
| NCBI Gene ID | LOC131014412 |
|---|---|
| GeneID | 131014412 |
| locus_tag | - |
| NCBI Name | LOC131014412 |
| 原始查询 | SmilChr03G003523 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| 产物 | zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629]; symbol=AT2G01050; hit=AT2G01050; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G01050 (AT2G01050)zinc ion binding / nucleic acid binding protein [Source:NCBI gene (formerly Entrezgene);Acc:814629] identity=28.4; qcov=0.304; evalue=7.4e-22; confidence=low |
| Rice | Os12g0156200- identity=23; qcov=0.289; evalue=3.05e-06; confidence=weak |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014412 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057798358.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057798358.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.60000 | XP_057798358.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.40000 | XP_057798358.1 |
| 5 | P-body | P-body | 0.40000 | XP_057798358.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:53841012 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr3:53841014 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B42,B68,D8 |
Chr3:53841043 |
C |
CG |
1bp_insertion | frameshift_variant | 1 | B76 |
Chr3:53841043 |
C |
CG |
1bp_insertion | CDS_variant | 1 | B76 |
Chr3:53841078 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B101,B19,B22,B91,C3 |
Chr3:53841092 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr3:53841106 |
TC |
T |
1bp_deletion | frameshift_variant | 3 | B30,B99,C1 |
Chr3:53841106 |
TC |
T |
1bp_deletion | CDS_variant | 3 | B30,B99,C1 |
Chr3:53841108 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B15 |
Chr3:53841117 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr3:53841122 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B132,B75 |
Chr3:53841132 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,B100,B39,C52,C61 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。