Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003535`

染色体: Chr03 坐标: 53951902-53961635 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003535`
名称	SmilChr03G003535
描述	probable serine/threonine protein kinase IRE
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	53951902 - 53961635 / `-`

ID 对照

NCBI Gene ID	`LOC131014418`
GeneID	`131014418`
locus_tag	`-`
NCBI Name	`LOC131014418`
原始查询	`SmilChr03G003535`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable serine/threonine protein kinase IRE
产物	probable serine/threonine protein kinase IRE
Arabidopsis	`AT5G62310` (IRE) AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:836352] identity=66.4; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0711800` - identity=55.1; qcov=1.02; evalue=0; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF26031 (IREH1)
InterPro	-
eggNOG	-
NR	GeneID:131014418

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057798371.1`
2	Cytoplasm	细胞质	1.00000	`XP_057798372.1`
3	Nucleus	细胞核	0.40000	`XP_057798373.1`
4	Chromosome	染色体	0.00000	`XP_057798371.1`
5	Centromere	着丝粒	0.00000	`XP_057798371.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:53955923`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr3:53959564`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B11,B135,B79,C45,D3
`Chr3:53959792`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B11,B135,B79,C45,D3
`Chr3:53960190`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B101,B46
`Chr3:53961168`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:53961323`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798371.1

1145 aa

572

1145

IREH1

Pkinase

PK_Tyr_Ser-Thr

PF26031 IREH1 196-313 aa PF00069 Pkinase 744-1030 aa PF07714 PK_Tyr_Ser-Thr 745-891 aa PF07714 PK_Tyr_Ser-Thr 920-1015 aa

XP_057798372.1

975 aa

488

975

IREH1

Pkinase

PK_Tyr_Ser-Thr

PF26031 IREH1 35-143 aa PF00069 Pkinase 574-860 aa PF07714 PK_Tyr_Ser-Thr 575-721 aa PF07714 PK_Tyr_Ser-Thr 750-845 aa

XP_057798373.1

945 aa

472

945

IREH1

Pkinase

PK_Tyr_Ser-Thr

PF26031 IREH1 4-113 aa PF00069 Pkinase 544-830 aa PF07714 PK_Tyr_Ser-Thr 545-691 aa PF07714 PK_Tyr_Ser-Thr 720-815 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798371.1`	Pfam	`PF26031`	IREH1	Domain	196	313	7e-51	172.3	IREH1-like domain
`XP_057798371.1`	Pfam	`PF00069`	Pkinase	Domain	744	1030	3.1e-65	220.9	Protein kinase domain
`XP_057798371.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	745	891	1.5e-31	110.4	Protein tyrosine and serine/threonine kinase
`XP_057798371.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	920	1015	1.5e-31	110.4	Protein tyrosine and serine/threonine kinase
`XP_057798372.1`	Pfam	`PF26031`	IREH1	Domain	35	143	7.2e-48	162.6	IREH1-like domain
`XP_057798372.1`	Pfam	`PF00069`	Pkinase	Domain	574	860	2e-65	221.5	Protein kinase domain
`XP_057798372.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	575	721	9.5e-32	111.0	Protein tyrosine and serine/threonine kinase
`XP_057798372.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	750	845	9.5e-32	111.0	Protein tyrosine and serine/threonine kinase
`XP_057798373.1`	Pfam	`PF26031`	IREH1	Domain	4	113	1.8e-48	164.5	IREH1-like domain
`XP_057798373.1`	Pfam	`PF00069`	Pkinase	Domain	544	830	1.9e-65	221.6	Protein kinase domain
`XP_057798373.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	545	691	8.7e-32	111.2	Protein tyrosine and serine/threonine kinase
`XP_057798373.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	720	815	8.7e-32	111.2	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057942388.1
CACACCCCCTCTTTCCCATGAAAATCTCTGTCCTCGAGCTCCCCCATCCCACCCCACCTCTCCCGAATAATCAATATCCTAACCCAAAACTCCATCTCTGTAATATACCGGTGGCGCAGATGCAATCCAGATGAAAAGTTGTGCACAATGTCGACCCTCCCCAACGACTCAGAGAATCAGCCGCCGCCGCCGCCGCTGCGAACACCCTCCATTTCCAAGCTTCGGAAAATCCCTCCGATCCCCTCCAGGCAGAAAACCTT...

XM_057942389.1
GCAAAAGGGTTCATTGGAGTCATTCAAAATCACTAAAAGTCCTATCCCCTAGAAGATCCGGGATAGAGGGTTATCATGCAGCTTTTGCCAAGGAGATGCAATCTCCACGTTTCCAGGCCATTCTGCGTTTAACTAGTGGCCGCAAGAAAAGAGCACCAGACATTAAGAGCTTCTCTCATGAACTTGACTCCAAAGGTGTCCGACCACTTCCATTTTGGAAATCTCGCGCCATCGGTCGCATGGAAGTATGTTAAGTTCAC...

CDS

3 records

下载 CDS FASTA

LOC131014418
ATGTCGACCCTCCCCAACGACTCAGAGAATCAGCCGCCGCCGCCGCCGCTGCGAACACCCTCCATTTCCAAGCTTCGGAAAATCCCTCCGATCCCCTCCAGGCAGAAAACCTTCGGCGACGGAGATGAGAGTTTTGATTTAGGGGGCACTAGTGAGCCCGACGGCGGCGATTCCAACGTCATTGGGCCCTCGATGCTGGGGCTCAATCAGATCAGGACGCGCTCCGCGCCTCTGCCCCTGGATCAGGTTATTGGCCTCGG...

LOC131014418
ATGAACTTGACTCCAAAGGTGTCCGACCACTTCCATTTTGGAAATCTCGCGCCATCGGTCGCATGGAAGTATGTTAAGTTCACATGTAGCCTCCTCTTTCTGCTTGAAATTATGGTAATGATACGAGCAAAATTTGATAAATTGAAAAGTGAAGTCGATGCTGACTTGGGCATTTTTGCTGGAGATTTGGTTGGTGTACTTGAGAAGACCTCACGATCTCATCCAGATTGCAAATGCTTTGAAGATTTGCTTATTATAGC...

Protein

3 records

下载 Protein FASTA

XP_057798371.1
MSTLPNDSENQPPPPPLRTPSISKLRKIPPIPSRQKTFGDGDESFDLGGTSEPDGGDSNVIGPSMLGLNQIRTRSAPLPLDQVIGLGAPQNFEDLEGQGNEEDDPRPKLSCVAQRSAATSMERGKRVHWSHSKSLKVLSPRRSGIEGYHAAFAKEMQSPRFQAILRLTSGRKKRAPDIKSFSHELDSKGVRPLPFWKSRAIGRMEEIMVMIRAKFDKLKSEVDADLGIFAGDLVGVLEKTSRSHPDCKCFEDLLIIARQC...

XP_057798372.1
MNLTPKVSDHFHFGNLAPSVAWKYVKFTCSLLFLLEIMVMIRAKFDKLKSEVDADLGIFAGDLVGVLEKTSRSHPDCKCFEDLLIIARQCAKMSPDEFWIKCEGIVQILDDRRQELPTGTLKQVHTRLLFILSRCTRLVHFQKEIGYEDDYVTSHQLSDLGVYPERLLKSASGVKAGHEKPCFKVIGQKQPNLVINQNEATEEVSTAKSVASSPGSFRMSSWKKLPSIAERNKRGQEESPCKDKPEILQQKKEPNNIKST...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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