Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003540`

染色体: Chr03 坐标: 54029571-54035422 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003540`
名称	SmilChr03G003540
描述	uncharacterized SmilChr03G003540
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	54029571 - 54035422 / `-`

ID 对照

NCBI Gene ID	`LOC131014423`
GeneID	`131014423`
locus_tag	`-`
NCBI Name	`LOC131014423`
原始查询	`SmilChr03G003540`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA photolyase [Source:NCBI gene (formerly Entrezgene);Acc:828632]; symbol=AT4G25290; hit=AT4G25290; species=arabidopsis; confidence=high
产物	DNA photolyase [Source:NCBI gene (formerly Entrezgene);Acc:828632]; symbol=AT4G25290; hit=AT4G25290; species=arabidopsis; confidence=high
Arabidopsis	`AT4G25290` (AT4G25290) DNA photolyase [Source:NCBI gene (formerly Entrezgene);Acc:828632] identity=51.5; qcov=1; evalue=0; confidence=high
Rice	`Os09g0532700` - identity=47.5; qcov=0.985; evalue=1.29e-178; confidence=high
GO	-
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF00875 (DNA_photolyase); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:131014423

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057798383.1`
2	Chloroplast membrane	叶绿体膜	1.00000	`XP_057798387.1`
3	Chloroplast stroma	叶绿体基质	0.60000	`XP_057798386.1`
4	Nucleus	细胞核	0.00000	`XP_057798387.1`
5	Chromosome	染色体	0.00000	`XP_057798387.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:54030079`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr3:54030320`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr3:54030347`	`G`	`A`	EMS_canonical_SNV	stop_gained	37	A14,A2,A7,B1,B105,B117,B122,B127,B130,B140,B15,B19,B40,B49,B6,B62,B67,B72,B76,B81,C10,C11,C13,C18,C2,C34,C36,C39,C4,C46,C64,C66,C69,C72,C8,C80,C9
`Chr3:54030394`	`CGA`	`C`	2bp_deletion	frameshift_variant	34	A11,A13,A16,A20,B124,B136,B139,B16,B17,B22,B26,B28,B29,B36,B52,B74,B75,B77,B90,B92,B99,C26,C33,C37,C43,C46,C52,C56,C59,C61,C77,C79,C87,D10
`Chr3:54030570`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:54030829`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B12,B55
`Chr3:54031311`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C32
`Chr3:54032584`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A14,B129,B50,C33
`Chr3:54032675`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr3:54033338`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A21,B132,C43,C65,C80
`Chr3:54033341`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B101,B46,C8
`Chr3:54033376`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A21,B132,C43,C65,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798383.1

737 aa

368

737

DNA_photolyase

Abhydrolase_1

Abhydrolase_6

PF00875 DNA_photolyase 49-160 aa PF00561 Abhydrolase_1 441-542 aa PF12697 Abhydrolase_6 443-713 aa

XP_057798384.1

735 aa

368

735

DNA_photolyase

Abhydrolase_1

Abhydrolase_6

PF00875 DNA_photolyase 49-160 aa PF00561 Abhydrolase_1 441-541 aa PF12697 Abhydrolase_6 443-711 aa

XP_057798385.1

707 aa

354

707

DNA_photolyase

Abhydrolase_1

Abhydrolase_6

PF00875 DNA_photolyase 49-160 aa PF00561 Abhydrolase_1 441-678 aa PF12697 Abhydrolase_6 443-683 aa

XP_057798386.1

705 aa

352

705

DNA_photolyase

Abhydrolase_1

Abhydrolase_6

PF00875 DNA_photolyase 49-160 aa PF00561 Abhydrolase_1 441-676 aa PF12697 Abhydrolase_6 443-681 aa

XP_057798387.1

588 aa

294

588

Abhydrolase_1

Abhydrolase_6

PF00561 Abhydrolase_1 292-393 aa PF12697 Abhydrolase_6 294-564 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798383.1`	Pfam	`PF00875`	DNA_photolyase	Domain	49	160	8.3e-22	78.6	DNA photolyase
`XP_057798383.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	441	542	2.7e-13	50.9	alpha/beta hydrolase fold
`XP_057798383.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	443	713	7e-16	60.2	Alpha/beta hydrolase family
`XP_057798384.1`	Pfam	`PF00875`	DNA_photolyase	Domain	49	160	8.1e-22	78.7	DNA photolyase
`XP_057798384.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	441	541	3.1e-11	44.1	alpha/beta hydrolase fold
`XP_057798384.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	443	711	4.9e-16	60.7	Alpha/beta hydrolase family
`XP_057798385.1`	Pfam	`PF00875`	DNA_photolyase	Domain	49	160	7.8e-22	78.7	DNA photolyase
`XP_057798385.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	441	678	1.8e-13	51.4	alpha/beta hydrolase fold
`XP_057798385.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	443	683	3.7e-16	61.1	Alpha/beta hydrolase family
`XP_057798386.1`	Pfam	`PF00875`	DNA_photolyase	Domain	49	160	7.6e-22	78.7	DNA photolyase
`XP_057798386.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	441	676	1.4e-11	45.3	alpha/beta hydrolase fold
`XP_057798386.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	443	681	2.9e-16	61.5	Alpha/beta hydrolase family
`XP_057798387.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	292	393	1.5e-13	51.7	alpha/beta hydrolase fold
`XP_057798387.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	294	564	5.1e-16	60.7	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057942401.1
TATGGTGTTAAATAAAGATTTTAAATTCAAAGTTGATTGATGCCTCTGATTTTTCAAGTGTGGTTTAAGCTGTTTAGCCATCCAAGAATATGGGTTTACAAACAAAAATCTCAGCTGCATATCTCCACCACAATCTCTCTCACGTGATTCTCAATCACACAATTATTCACTATAAACCCTCAATAAATCCCTCCCTTTGATGGATTTTGGCTCCAAAACCACCTCCCCATTTTCACCCTCAATTCCCCCATCTCATGATG...

XM_057942403.1
TGGTGTTAAATAAAGATTTTAAATTCAAAGTTGATTGATGCCTCTGATTTTTCAAGTGTGGTTTAAGCTGTTTAGCCATCCAAGAATATGGGTTTACAAACAAAAATCTCAGCTGCATATCTCCACCACAATCTCTCTCACGTGATTCTCAATCACACAATTATTCACTATAAACCCTCAATAAATCCCTCCCTTTGATGGATTTTGGCTCCAAAACCACCTCCCCATTTTCACCCTCAATTCCCCCATCTCATGATGCT...

CDS

5 records

下载 CDS FASTA

LOC131014423
ATGATGCTTCTCTTTCACCCCCCTCTTTTCTCAGTTTCAATACCCCCAAAACGATCCTTGTTGGGACCGAAAGCTCCGCTCCGATGCTCTGCCTCCGCCACAGATGTGAGGGTGGAATCCGGCGCGGCAGCCAACAGCAGTGCCGCCGTTCTTTGGTACAAGCACGACCTTCGCATCGAAGACCACCCGGGGCTCATCGCCGCATCCCAGCATCGAACTGTTGTTCCCCTTTACGTATTTGATCGCCGTATTCTCTCACG...

Protein

5 records

下载 Protein FASTA

XP_057798383.1
MMLLFHPPLFSVSIPPKRSLLGPKAPLRCSASATDVRVESGAAANSSAAVLWYKHDLRIEDHPGLIAASQHRTVVPLYVFDRRILSRFSDEMLELLLFALEDLRKLLKERGSNLMIRFGTAEDVIRKLVKEVQATGIFVEEEVEYELCVMVDNVKESLSSLSFKGGNPKIVMWRTPFYDVKSLSDLPSSFHDFQKLKLSVLPGLEPPVLPATLTDLSWGTFPTMIDLKEYMDDVSFAGNMKNEWTSIKKLSAENMLQRKK...

XP_057798384.1
MMLLFHPPLFSVSIPPKRSLLGPKAPLRCSASATDVRVESGAAANSSAAVLWYKHDLRIEDHPGLIAASQHRTVVPLYVFDRRILSRFSDEMLELLLFALEDLRKLLKERGSNLMIRFGTAEDVIRKLVKEVQATGIFVEEEVEYELCVMVDNVKESLSSLSFKGGNPKIVMWRTPFYDVKSLSDLPSSFHDFQKLKLSVLPGLEPPVLPATLTDLSWGTFPTMIDLKEYMDDVSFAGNMKNEWTSIKKLSAENMLQRKK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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