当前解析结果
SmilChr03G003545| 统一新 Gene ID | SmilChr03G003545 |
|---|---|
| 名称 | SmilChr03G003545 |
| 描述 | UDP-glucuronate 4-epimerase 3-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 54085820 - 54087575 / + |
| NCBI Gene ID | LOC131014426 |
|---|---|
| GeneID | 131014426 |
| locus_tag | - |
| NCBI Name | LOC131014426 |
| 原始查询 | SmilChr03G003545 |
| 来源 | GFF basic annotation; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glucuronate 4-epimerase 3-like |
| 产物 | UDP-glucuronate 4-epimerase 3-like |
| Arabidopsis | AT4G00110 (GAE3)UDP-D-glucuronate 4-epimerase 3 [Source:NCBI gene (formerly Entrezgene);Acc:828145] identity=71.6; qcov=0.993; evalue=0; confidence=high |
| Rice | Os02g0791500 (OsUGlcAE3)- identity=68; qcov=0.962; evalue=0; confidence=high |
| GO | - |
| KEGG | smil00053 (Ascorbate and aldarate metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF04321 (RmlD_sub_bind); PF16363 (GDP_Man_Dehyd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014426 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057798390.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057798390.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057798390.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057798390.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057798390.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:54086198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr3:54086283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B136 |
Chr3:54086484 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B110 |
Chr3:54086542 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A11,C33,C61 |
Chr3:54086997 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | B62,C80 |
Chr3:54086997 |
AC |
A |
1bp_deletion | CDS_variant | 2 | B62,C80 |
Chr3:54087016 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A4,D2,D7 |
Chr3:54087049 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr3:54087119 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr3:54087169 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B75,B99 |
Chr3:54087343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,B129,B50,C33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798390.1PF04321
RmlD_sub_bind 85-267 aa
PF02719
Polysacc_synt_2 85-315 aa
PF01370
Epimerase 85-322 aa
PF01073
3Beta_HSD 86-368 aa
PF16363
GDP_Man_Dehyd 86-405 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798390.1 |
Pfam | PF04321 |
RmlD_sub_bind | Domain | 85 | 267 | 1.9e-12 | 47.6 | RmlD substrate binding domain |
XP_057798390.1 |
Pfam | PF02719 |
Polysacc_synt_2 | Family | 85 | 315 | 8.6e-10 | 39.0 | Polysaccharide biosynthesis protein |
XP_057798390.1 |
Pfam | PF01370 |
Epimerase | Family | 85 | 322 | 1.2e-50 | 172.9 | NAD dependent epimerase/dehydratase family |
XP_057798390.1 |
Pfam | PF01073 |
3Beta_HSD | Family | 86 | 368 | 2.1e-15 | 57.2 | 3-beta hydroxysteroid dehydrogenase/isomerase family |
XP_057798390.1 |
Pfam | PF16363 |
GDP_Man_Dehyd | Domain | 86 | 405 | 2.4e-46 | 159.4 | GDP-mannose 4,6 dehydratase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。