Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003564`

染色体: Chr03 坐标: 54284146-54289001 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003564`
名称	SmilChr03G003564
描述	protein trichome birefringence-like 18
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	54284146 - 54289001 / `-`

ID 对照

NCBI Gene ID	`LOC131014445`
GeneID	`131014445`
locus_tag	`-`
NCBI Name	`LOC131014445`
原始查询	`SmilChr03G003564`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein trichome birefringence-like 18
产物	protein trichome birefringence-like 18
Arabidopsis	`AT4G25360` (TBL18) TRICHOME BIREFRINGENCE-LIKE 18 [Source:NCBI gene (formerly Entrezgene);Acc:828639] identity=59; qcov=0.977; evalue=0; confidence=high
Rice	`Os01g0914800` (OsTBL39) - identity=65.1; qcov=0.728; evalue=0; confidence=high
GO	GO:0005794 (Golgi apparatus); GO:0016413 (O-acetyltransferase activity)
KEGG	-
Pfam	PF13839 (PC-Esterase); PF14416 (PMR5N)
InterPro	-
eggNOG	-
NR	GeneID:131014445

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057798406.1`
2	Golgi stack	高尔基堆	0.20000	`XP_057798406.1`
3	Nucleus	细胞核	0.00000	`XP_057798406.1`
4	Chromosome	染色体	0.00000	`XP_057798406.1`
5	Centromere	着丝粒	0.00000	`XP_057798406.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:54284372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr3:54284418`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A18,B118,B76
`Chr3:54284583`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B34,B37,B63,B83,C48
`Chr3:54284636`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B2,B84,C76
`Chr3:54284882`	`GC`	`G`	1bp_deletion	frameshift_variant	1	A19
`Chr3:54284882`	`GC`	`G`	1bp_deletion	CDS_variant	1	A19
`Chr3:54285099`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr3:54285158`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B34,B37,B63,B83,C48
`Chr3:54286605`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr3:54286647`	`T`	`TGG`	2bp_insertion	frameshift_variant	1	D7
`Chr3:54286647`	`T`	`TGG`	2bp_insertion	CDS_variant	1	D7
`Chr3:54287735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798406.1

556 aa

278

556

PMR5N

PC-Esterase

PF14416 PMR5N 201-253 aa PF13839 PC-Esterase 254-546 aa

XP_057798407.1

556 aa

278

556

PMR5N

PC-Esterase

PF14416 PMR5N 201-253 aa PF13839 PC-Esterase 254-546 aa

XP_057798408.1

555 aa

278

555

PMR5N

PC-Esterase

PF14416 PMR5N 200-252 aa PF13839 PC-Esterase 253-545 aa

XP_057798409.1

555 aa

278

555

PMR5N

PC-Esterase

PF14416 PMR5N 200-252 aa PF13839 PC-Esterase 253-545 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798406.1`	Pfam	`PF14416`	PMR5N	Domain	201	253	7.4e-22	78.1	PMR5 N terminal Domain
`XP_057798406.1`	Pfam	`PF13839`	PC-Esterase	Family	254	546	6.2e-80	269.9	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
`XP_057798407.1`	Pfam	`PF14416`	PMR5N	Domain	201	253	7.4e-22	78.1	PMR5 N terminal Domain
`XP_057798407.1`	Pfam	`PF13839`	PC-Esterase	Family	254	546	6.2e-80	269.9	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
`XP_057798408.1`	Pfam	`PF14416`	PMR5N	Domain	200	252	7.4e-22	78.1	PMR5 N terminal Domain
`XP_057798408.1`	Pfam	`PF13839`	PC-Esterase	Family	253	545	6.2e-80	269.9	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
`XP_057798409.1`	Pfam	`PF14416`	PMR5N	Domain	200	252	7.4e-22	78.1	PMR5 N terminal Domain
`XP_057798409.1`	Pfam	`PF13839`	PC-Esterase	Family	253	545	6.2e-80	269.9	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057942426.1
GGTTAGGATTAGATCATACTTATTGTTAACGCCAGGTGTCATTCATCATTAGTCCAATAATTCATCATGACATGAGTCCAATTGCCAGATTTTAGTTCGTGCCGACGTGCTGTTGCATTAAAATTAAAAAATAATCAACTTATTTTGCCTCTAAATTCACTTCAGCAAAGAGGGCGGATCCAATCCCTAAAATCTATATCAATTGTCAACGAATCAACCTTTCAAGATCCAAAATCTCTTACCATTAATGTGTATCAATT...

XM_057942423.1
AATAATTCATCATGACATGAGTCCAATTGCCAGATTTTAGTTCGTGCCGACGTGCTGTTGCATTAAAATTAAAAAATAATCAACTTATTTTGCCTCTAAATTCACTTCAGCAAAGAGGGCGGATCCAATCCCTAAAATCTATATCAATTGTCAACGAATCAACCTTTCAAGATCCAAAATCTCTTACCATTAATGTGTATCAATTGATCTTTTACACGCCCCAAATCGTGCCTCCACTTTCCACAGCTCCAAGTTCCGTC...

CDS

4 records

下载 CDS FASTA

LOC131014445
ATGAAATCTGTTTCGTTTAAAGAATGGCAAAAAACTTCATATCCGAAGGCCCTTCTATCAATTATTGCTTCAGTTGGAGGGCTTGCCTTATTCTTACTGCTTGCATCAACTCTGTTGGTCTCACAACCCATTGGCTCTACGATCCGTGGGTATTTCTATGGTGTTAATGGCCCGAGAAAGCTTGATTCAGAATCCTCCCTCAATCTTTCGGCTGCTGAGTCCGATCACATTGTCCAGCCATTTGTTGAAGGAGACAAATC...

Protein

4 records

下载 Protein FASTA

XP_057798406.1
MKSVSFKEWQKTSYPKALLSIIASVGGLALFLLLASTLLVSQPIGSTIRGYFYGVNGPRKLDSESSLNLSAAESDHIVQPFVEGDKSNVTAFADHQSEVNDGSKLDESGEGDSKGTLIERAKNETSESGQVESENLEDKRDSMNTLLPDKSFEGSASVASGDKPTVLTESVDSSAAVTNLSQPNVAEAAVGSSPGDTYVAECDLYHGKWIHDAAGPLYRNDSCPIITQMQNCQGNGRPDKDYENWRWKPSQCDLPRFDAR...

XP_057798407.1
MKSVSFKEWQKTSYPKALLSIIASVGGLALFLLLASTLLVSQPIGSTIRGYFYGVNGPRKLDSESSLNLSAAESDHIVQPFVEGDKSNVTAFADHQSEVNDGSKLDESGEGDSKGTLIERAKNETSESGQVESENLEDKRDSMNTLLPDKSFEGSASVASGDKPTVLTESVDSSAAVTNLSQPNVAEAAVGSSPGDTYVAECDLYHGKWIHDAAGPLYRNDSCPIITQMQNCQGNGRPDKDYENWRWKPSQCDLPRFDAR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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