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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G003581

染色体: Chr03 坐标: 54412085-54419012 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G003581
名称SmilChr03G003581
描述LRR receptor-like serine/threonine-protein kinase ERL1
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向54412085 - 54419012 / -

ID 对照

NCBI Gene IDLOC131014461
GeneID131014461
locus_tag-
NCBI NameLOC131014461
原始查询SmilChr03G003581

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述LRR receptor-like serine/threonine-protein kinase ERL1
产物LRR receptor-like serine/threonine-protein kinase ERL1
ArabidopsisAT5G62230 (ERL1)
ERECTA-like 1 [Source:NCBI gene (formerly Entrezgene);Acc:836344]
identity=75.8; qcov=1; evalue=0; confidence=high
RiceOs06g0130100 (SIK1)
-
identity=76; qcov=1; evalue=0; confidence=high
GOGO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0033612 (receptor serine/threonine kinase binding)
KEGGsmil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage))
PfamPF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro-
eggNOG-
NRGeneID:131014461

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057798422.1
2 Nucleus 细胞核 0.00000 XP_057798422.1
3 Chromosome 染色体 0.00000 XP_057798422.1
4 Centromere 着丝粒 0.00000 XP_057798422.1
5 Chromatin 染色质 0.00000 XP_057798422.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:54412504 C T EMS_canonical_SNV CDS_variant 1 D7
Chr3:54412512 G A EMS_canonical_SNV CDS_variant 1 D7
Chr3:54412586 C T EMS_canonical_SNV CDS_variant 1 B99
Chr3:54412726 G A EMS_canonical_SNV CDS_variant 2 C13,C27
Chr3:54412747 G A EMS_canonical_SNV CDS_variant 1 B99
Chr3:54412773 C T EMS_canonical_SNV CDS_variant 2 B12,B55
Chr3:54412953 C T EMS_canonical_SNV CDS_variant 2 A4,D2
Chr3:54413044 G A EMS_canonical_SNV CDS_variant 4 B117,B125,B128,C73
Chr3:54413142 C T EMS_canonical_SNV CDS_variant 1 B57
Chr3:54413443 G A EMS_canonical_SNV CDS_variant 1 B57
Chr3:54413819 G A EMS_canonical_SNV CDS_variant 1 D3
Chr3:54414030 G A EMS_canonical_SNV CDS_variant 1 D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798422.1
994 aa
N
1
497
994
LRRNT_2
LRR_1
LRR_8
LRR_1
LRR_6
LRR_1
LRR_1
LRR_1
LRR_6
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_14
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 38-77 aa PF00560 LRR_1 107-129 aa PF13855 LRR_8 131-190 aa PF00560 LRR_1 155-175 aa PF13516 LRR_6 178-193 aa PF00560 LRR_1 179-198 aa PF00560 LRR_1 204-225 aa PF00560 LRR_1 228-249 aa PF13516 LRR_6 248-265 aa PF00560 LRR_1 253-273 aa PF00560 LRR_1 299-320 aa PF00560 LRR_1 325-344 aa PF00560 LRR_1 346-368 aa PF00560 LRR_1 371-392 aa PF23598 LRR_14 404-538 aa PF00560 LRR_1 418-439 aa PF00560 LRR_1 442-464 aa PF13855 LRR_8 442-501 aa PF00560 LRR_1 466-488 aa PF00560 LRR_1 490-512 aa PF00560 LRR_1 514-536 aa PF00069 Pkinase 664-922 aa PF07714 PK_Tyr_Ser-Thr 666-925 aa
XP_057798423.1
950 aa
N
1
475
950
LRRNT_2
LRR_1
LRR_8
LRR_1
LRR_6
LRR_1
LRR_1
LRR_1
LRR_6
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_14
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 1-33 aa PF00560 LRR_1 63-85 aa PF13855 LRR_8 87-146 aa PF00560 LRR_1 111-131 aa PF13516 LRR_6 134-149 aa PF00560 LRR_1 135-154 aa PF00560 LRR_1 160-181 aa PF00560 LRR_1 184-205 aa PF13516 LRR_6 204-221 aa PF00560 LRR_1 209-229 aa PF00560 LRR_1 255-276 aa PF00560 LRR_1 281-300 aa PF00560 LRR_1 302-324 aa PF00560 LRR_1 327-348 aa PF23598 LRR_14 360-494 aa PF00560 LRR_1 374-395 aa PF00560 LRR_1 398-420 aa PF13855 LRR_8 398-457 aa PF00560 LRR_1 422-444 aa PF00560 LRR_1 446-468 aa PF00560 LRR_1 470-492 aa PF00069 Pkinase 620-878 aa PF07714 PK_Tyr_Ser-Thr 622-881 aa
XP_057798424.1
950 aa
N
1
475
950
LRRNT_2
LRR_1
LRR_8
LRR_1
LRR_6
LRR_1
LRR_1
LRR_1
LRR_6
LRR_1
LRR_1
LRR_1
LRR_1
LRR_1
LRR_14
LRR_1
LRR_1
LRR_8
LRR_1
LRR_1
LRR_1
Pkinase
PK_Tyr_Ser-Thr
C
PF08263 LRRNT_2 1-33 aa PF00560 LRR_1 63-85 aa PF13855 LRR_8 87-146 aa PF00560 LRR_1 111-131 aa PF13516 LRR_6 134-149 aa PF00560 LRR_1 135-154 aa PF00560 LRR_1 160-181 aa PF00560 LRR_1 184-205 aa PF13516 LRR_6 204-221 aa PF00560 LRR_1 209-229 aa PF00560 LRR_1 255-276 aa PF00560 LRR_1 281-300 aa PF00560 LRR_1 302-324 aa PF00560 LRR_1 327-348 aa PF23598 LRR_14 360-494 aa PF00560 LRR_1 374-395 aa PF00560 LRR_1 398-420 aa PF13855 LRR_8 398-457 aa PF00560 LRR_1 422-444 aa PF00560 LRR_1 446-468 aa PF00560 LRR_1 470-492 aa PF00069 Pkinase 620-878 aa PF07714 PK_Tyr_Ser-Thr 622-881 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057798422.1 Pfam PF08263 LRRNT_2 Family 38 77 1e-09 39.2 Leucine rich repeat N-terminal domain
XP_057798422.1 Pfam PF00560 LRR_1 Repeat 107 129 3.4e-59 184.6 Leucine Rich Repeat
XP_057798422.1 Pfam PF13855 LRR_8 Repeat 131 190 1.7e-40 137.3 Leucine rich repeat
XP_057798422.1 Pfam PF00560 LRR_1 Repeat 155 175 3.4e-59 184.6 Leucine Rich Repeat
XP_057798422.1 Pfam PF13516 LRR_6 Repeat 178 193 1e-05 25.9 Leucine Rich repeat
XP_057798422.1 Pfam PF00560 LRR_1 Repeat 179 198 3.4e-59 184.6 Leucine Rich Repeat
XP_057798422.1 Pfam PF00560 LRR_1 Repeat 204 225 3.4e-59 184.6 Leucine Rich Repeat
XP_057798422.1 Pfam PF00560 LRR_1 Repeat 228 249 3.4e-59 184.6 Leucine Rich Repeat
XP_057798422.1 Pfam PF13516 LRR_6 Repeat 248 265 1e-05 25.9 Leucine Rich repeat
XP_057798422.1 Pfam PF00560 LRR_1 Repeat 253 273 3.4e-59 184.6 Leucine Rich Repeat
XP_057798422.1 Pfam PF00560 LRR_1 Repeat 299 320 3.4e-59 184.6 Leucine Rich Repeat
XP_057798422.1 Pfam PF00560 LRR_1 Repeat 325 344 3.4e-59 184.6 Leucine Rich Repeat
XP_057798422.1 Pfam PF00560 LRR_1 Repeat 346 368 3.4e-59 184.6 Leucine Rich Repeat
XP_057798422.1 Pfam PF00560 LRR_1 Repeat 371 392 3.4e-59 184.6 Leucine Rich Repeat
XP_057798422.1 Pfam PF23598 LRR_14 Repeat 404 538 1.1e-32 113.9 Leucine-rich repeat region
XP_057798422.1 Pfam PF00560 LRR_1 Repeat 418 439 3.4e-59 184.6 Leucine Rich Repeat
XP_057798422.1 Pfam PF00560 LRR_1 Repeat 442 464 3.4e-59 184.6 Leucine Rich Repeat
XP_057798422.1 Pfam PF13855 LRR_8 Repeat 442 501 1.7e-40 137.3 Leucine rich repeat
XP_057798422.1 Pfam PF00560 LRR_1 Repeat 466 488 3.4e-59 184.6 Leucine Rich Repeat
XP_057798422.1 Pfam PF00560 LRR_1 Repeat 490 512 3.4e-59 184.6 Leucine Rich Repeat
XP_057798422.1 Pfam PF00560 LRR_1 Repeat 514 536 3.4e-59 184.6 Leucine Rich Repeat
XP_057798422.1 Pfam PF00069 Pkinase Domain 664 922 4.4e-41 141.7 Protein kinase domain
XP_057798422.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 666 925 1.2e-38 133.6 Protein tyrosine and serine/threonine kinase
XP_057798423.1 Pfam PF08263 LRRNT_2 Family 1 33 4.9e-06 27.4 Leucine rich repeat N-terminal domain
XP_057798423.1 Pfam PF00560 LRR_1 Repeat 63 85 1.2e-59 186.0 Leucine Rich Repeat
XP_057798423.1 Pfam PF13855 LRR_8 Repeat 87 146 7.3e-41 138.5 Leucine rich repeat
XP_057798423.1 Pfam PF00560 LRR_1 Repeat 111 131 1.2e-59 186.0 Leucine Rich Repeat
XP_057798423.1 Pfam PF13516 LRR_6 Repeat 134 149 5.4e-06 26.8 Leucine Rich repeat
XP_057798423.1 Pfam PF00560 LRR_1 Repeat 135 154 1.2e-59 186.0 Leucine Rich Repeat
XP_057798423.1 Pfam PF00560 LRR_1 Repeat 160 181 1.2e-59 186.0 Leucine Rich Repeat
XP_057798423.1 Pfam PF00560 LRR_1 Repeat 184 205 1.2e-59 186.0 Leucine Rich Repeat
XP_057798423.1 Pfam PF13516 LRR_6 Repeat 204 221 5.4e-06 26.8 Leucine Rich repeat
XP_057798423.1 Pfam PF00560 LRR_1 Repeat 209 229 1.2e-59 186.0 Leucine Rich Repeat
XP_057798423.1 Pfam PF00560 LRR_1 Repeat 255 276 1.2e-59 186.0 Leucine Rich Repeat
XP_057798423.1 Pfam PF00560 LRR_1 Repeat 281 300 1.2e-59 186.0 Leucine Rich Repeat
XP_057798423.1 Pfam PF00560 LRR_1 Repeat 302 324 1.2e-59 186.0 Leucine Rich Repeat
XP_057798423.1 Pfam PF00560 LRR_1 Repeat 327 348 1.2e-59 186.0 Leucine Rich Repeat
XP_057798423.1 Pfam PF23598 LRR_14 Repeat 360 494 8.3e-33 114.3 Leucine-rich repeat region
XP_057798423.1 Pfam PF00560 LRR_1 Repeat 374 395 1.2e-59 186.0 Leucine Rich Repeat
XP_057798423.1 Pfam PF00560 LRR_1 Repeat 398 420 1.2e-59 186.0 Leucine Rich Repeat
XP_057798423.1 Pfam PF13855 LRR_8 Repeat 398 457 7.3e-41 138.5 Leucine rich repeat
XP_057798423.1 Pfam PF00560 LRR_1 Repeat 422 444 1.2e-59 186.0 Leucine Rich Repeat
XP_057798423.1 Pfam PF00560 LRR_1 Repeat 446 468 1.2e-59 186.0 Leucine Rich Repeat
XP_057798423.1 Pfam PF00560 LRR_1 Repeat 470 492 1.2e-59 186.0 Leucine Rich Repeat
XP_057798423.1 Pfam PF00069 Pkinase Domain 620 878 4.1e-41 141.9 Protein kinase domain
XP_057798423.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 622 881 1.2e-38 133.7 Protein tyrosine and serine/threonine kinase
XP_057798424.1 Pfam PF08263 LRRNT_2 Family 1 33 4.9e-06 27.4 Leucine rich repeat N-terminal domain
XP_057798424.1 Pfam PF00560 LRR_1 Repeat 63 85 1.2e-59 186.0 Leucine Rich Repeat
XP_057798424.1 Pfam PF13855 LRR_8 Repeat 87 146 7.3e-41 138.5 Leucine rich repeat
XP_057798424.1 Pfam PF00560 LRR_1 Repeat 111 131 1.2e-59 186.0 Leucine Rich Repeat
XP_057798424.1 Pfam PF13516 LRR_6 Repeat 134 149 5.4e-06 26.8 Leucine Rich repeat
XP_057798424.1 Pfam PF00560 LRR_1 Repeat 135 154 1.2e-59 186.0 Leucine Rich Repeat
XP_057798424.1 Pfam PF00560 LRR_1 Repeat 160 181 1.2e-59 186.0 Leucine Rich Repeat
XP_057798424.1 Pfam PF00560 LRR_1 Repeat 184 205 1.2e-59 186.0 Leucine Rich Repeat
XP_057798424.1 Pfam PF13516 LRR_6 Repeat 204 221 5.4e-06 26.8 Leucine Rich repeat
XP_057798424.1 Pfam PF00560 LRR_1 Repeat 209 229 1.2e-59 186.0 Leucine Rich Repeat
XP_057798424.1 Pfam PF00560 LRR_1 Repeat 255 276 1.2e-59 186.0 Leucine Rich Repeat
XP_057798424.1 Pfam PF00560 LRR_1 Repeat 281 300 1.2e-59 186.0 Leucine Rich Repeat
XP_057798424.1 Pfam PF00560 LRR_1 Repeat 302 324 1.2e-59 186.0 Leucine Rich Repeat
XP_057798424.1 Pfam PF00560 LRR_1 Repeat 327 348 1.2e-59 186.0 Leucine Rich Repeat
XP_057798424.1 Pfam PF23598 LRR_14 Repeat 360 494 8.3e-33 114.3 Leucine-rich repeat region
XP_057798424.1 Pfam PF00560 LRR_1 Repeat 374 395 1.2e-59 186.0 Leucine Rich Repeat
XP_057798424.1 Pfam PF00560 LRR_1 Repeat 398 420 1.2e-59 186.0 Leucine Rich Repeat
XP_057798424.1 Pfam PF13855 LRR_8 Repeat 398 457 7.3e-41 138.5 Leucine rich repeat
XP_057798424.1 Pfam PF00560 LRR_1 Repeat 422 444 1.2e-59 186.0 Leucine Rich Repeat
XP_057798424.1 Pfam PF00560 LRR_1 Repeat 446 468 1.2e-59 186.0 Leucine Rich Repeat
XP_057798424.1 Pfam PF00560 LRR_1 Repeat 470 492 1.2e-59 186.0 Leucine Rich Repeat
XP_057798424.1 Pfam PF00069 Pkinase Domain 620 878 4.1e-41 141.9 Protein kinase domain
XP_057798424.1 Pfam PF07714 PK_Tyr_Ser-Thr Domain 622 881 1.2e-38 133.7 Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057942439.1
GGGAAGCGGCAGTACGGCTGACGGCCGCTGCTAACACCTCACATCCTTTACTTCAAACTGTTTAACGTCGCTTCACCGCCGTTTCCTCTCTCTCTCTCTCTCTCTTTCTCCACGTACAAATCCATAATCACACTATTTTCTCTCTCTTCATAACGCAACGTTGCAAATAGTGTAGCTTTTTGTGTGTTACAGTACACTGCGTCTGTGCGGGCAGTGCTGTTGCCAAACATTTAACGCTCTCTCTCTCTCTTCCCTAATTG...
XM_057942440.1
ATCACACTATTTTCTCTCTCTTCATAACGCAACGTTGCAAATAGTGTAGCTTTTTGTGTGTTACAGTACACTGCGTCTGTGCGGGCAGTGCTGTTGCCAAACATTTAACGCTCTCTCTCTCTCTTCCCTAATTGCTTCTGCTGCTCTGCCTTCCAGATCACGCCAAACGCCTGCTTCTTTTGTTGCTCTCTCTCTCCTAACACATATTCCTACATTCACTGCCACCAAGTATCACGATTCAGCTATGAGGAGAGAGAGAT...

CDS

3 records

下载 CDS FASTA
LOC131014461
ATGGTAGATGAACAGGACTTCTCTATGCAGAAGAGTAAGACGAACTTGAAAGCGAGTTTCCTCCATTTTGTGCTCGCCTTCTTCATTCTACTTCCTCTCGCCTCATCTCTCAGCGATGAAGGCAAAGCGTTAATGTCGATTAAAGCTTCGTTCAGCAACGTGGCAAATGTGCTGCTGGACTGGGATGAAGTGCACAATGATGATTTCTGTTCATGGAGAGGTGTATCTTGTGGAAATCTCACCATGTCTGTTGTTGCTCT...
LOC131014461
ATGTCGATTAAAGCTTCGTTCAGCAACGTGGCAAATGTGCTGCTGGACTGGGATGAAGTGCACAATGATGATTTCTGTTCATGGAGAGGTGTATCTTGTGGAAATCTCACCATGTCTGTTGTTGCTCTGAATCTCTCAAATCTCAACTTGGGTGGAGAAATCTCACCTGCCATTGGAGATTTGAGGAACCTTGAGTCTGTAGACCTTCAAGGAAACAAATTAACGGGTCAAATCCCAGACGAGATTGGAAACTGTGTCTC...

Protein

3 records

下载 Protein FASTA
XP_057798422.1
MVDEQDFSMQKSKTNLKASFLHFVLAFFILLPLASSLSDEGKALMSIKASFSNVANVLLDWDEVHNDDFCSWRGVSCGNLTMSVVALNLSNLNLGGEISPAIGDLRNLESVDLQGNKLTGQIPDEIGNCVSLELLDVSENLLEGDIPFSISKLKQLELLNLKNNQLTGPIPSTLTQIPNLKTLDLAQNQLTGEIPRLIYWNEVLQYLGLRGNMLTGILSPDICQLTGLWYFDVRGNNLTGPIPDNIGNCTSFEILDISYN...
XP_057798423.1
MSIKASFSNVANVLLDWDEVHNDDFCSWRGVSCGNLTMSVVALNLSNLNLGGEISPAIGDLRNLESVDLQGNKLTGQIPDEIGNCVSLELLDVSENLLEGDIPFSISKLKQLELLNLKNNQLTGPIPSTLTQIPNLKTLDLAQNQLTGEIPRLIYWNEVLQYLGLRGNMLTGILSPDICQLTGLWYFDVRGNNLTGPIPDNIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNMLTGKIPEVIGLMQALAVLDL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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