Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003590`

染色体: Chr03 坐标: 54556149-54564451 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003590`
名称	SmilChr03G003590
描述	uncharacterized SmilChr03G003590
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	54556149 - 54564451 / `+`

ID 对照

NCBI Gene ID	`LOC131014467`
GeneID	`131014467`
locus_tag	`-`
NCBI Name	`LOC131014467`
原始查询	`SmilChr03G003590`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Calcineurin-like metallo-phosphoesterase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826786]; symbol=AT4G11800; hit=AT4G11800; species=arabidopsis; confidence=high
产物	Calcineurin-like metallo-phosphoesterase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826786]; symbol=AT4G11800; hit=AT4G11800; species=arabidopsis; confidence=high
Arabidopsis	`AT4G11800` (AT4G11800) Calcineurin-like metallo-phosphoesterase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826786] identity=75.9; qcov=0.984; evalue=0; confidence=high
Rice	`Os07g0106000` (B1317D11.117-1) - identity=73; qcov=0.988; evalue=0; confidence=high
GO	GO:0016787 (hydrolase activity)
KEGG	-
Pfam	PF00149 (Metallophos)
InterPro	-
eggNOG	-
NR	GeneID:131014467

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057798444.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057798444.1`
3	Golgi apparatus	高尔基体	0.60000	`XP_057798445.1`
4	Nucleus membrane	核膜	0.20000	`XP_057798444.1`
5	Trans-golgi network	Trans-golgi network	0.20000	`XP_057798445.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:54557381`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr3:54558188`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C2
`Chr3:54558948`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B31,B69,C1
`Chr3:54559589`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr3:54559638`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:54559896`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:54559938`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,C22
`Chr3:54560226`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B112,B125,B128,C73
`Chr3:54561818`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B45
`Chr3:54561818`	`TA`	`T`	1bp_deletion	CDS_variant	1	B45
`Chr3:54562441`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B75,C2
`Chr3:54562446`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C64,C66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798444.1

1022 aa

511

1022

Metallophos

PF00149 Metallophos 424-589 aa

XP_057798445.1

829 aa

414

829

Metallophos

PF00149 Metallophos 231-396 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798444.1`	Pfam	`PF00149`	Metallophos	Domain	424	589	9.3e-06	26.9	Calcineurin-like phosphoesterase
`XP_057798445.1`	Pfam	`PF00149`	Metallophos	Domain	231	396	6.1e-06	27.5	Calcineurin-like phosphoesterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942461.1
CGTGTCCATTTTTCTAATCATTGTAGGATTGGCGAGGACGGTGACGAAGCGCGCTGTTTGTGTGCGCGCCTACAAAGAATATGCCAAAAAATGCTTCCTCCTTTTCTTAATCACTGCAAATTTCCCAATGCTTCTTCCTATTAAACCAACCAACACCAATCTCTAATCATATTCTCTGCTTCATCCCGGTTACTTCCTCAAATCTCGGAAAACGGCATTTTGAACTTTTGATGTAAGAGAGCAACCGCCGGAGACCGCGA...

XM_057942462.1
TTTGTTCTTAACCATCTATGTGTCTTCCATTTTATTTCTTCTTGTATTTCACATTATATTCATTGGCCTCTGGTATATTGGCCTTGTTGCTCGGGTGGCTGGAAGAAGACCTGCAATTCTGACAATCCTTCAAAACTGTGCTCCACTGTGGCAACCGTGCTAACATGAGAGAAAAGACATTTGAAAGAAGGTTTTCTGGCTGGTTTACTCTGTGGAACAAGGAAGAGAGGGATTCATGGCTTGCAAAATTTGTTCGCATG...

CDS

2 records

下载 CDS FASTA

LOC131014467
ATGGGCTCTGACAAACAGAACTCTGGTTTATTGGAGACTTTAAAGATGGAGAGAGTTAGGACAATATTCACTCACACGTATCCATATCCGCATGAACATTCACGGCATGCCGTCATTGCTGTTTTTATAGGTTGCCTATTTTTCATATCATCGGATAACATGCACACTCTTGTTCAGAAGTTAGACAGCAATATTAAGTGGTGGTCTATGTATGCGTGCTTGTTGGGGTTCTTCTATTTCTTTTCTTCGCCTTTTATAGG...

LOC131014467
ATGAGAGAAAAGACATTTGAAAGAAGGTTTTCTGGCTGGTTTACTCTGTGGAACAAGGAAGAGAGGGATTCATGGCTTGCAAAATTTGTTCGCATGAATGAGTTCAAAAAGCAAGTTTGTAAATCATGGTTTGCTCCAGTTGGTTCCGCTAACGATTATCCATTTTTATCAAAATGGGTCATTTATGGAGAGCTGACTTGTAGCGGTGGCTCGTGTGCAGACTCACCAGCTGAAATTTCACCTATATATTCATTGTGGGC...

Protein

2 records

下载 Protein FASTA

XP_057798444.1
MGSDKQNSGLLETLKMERVRTIFTHTYPYPHEHSRHAVIAVFIGCLFFISSDNMHTLVQKLDSNIKWWSMYACLLGFFYFFSSPFIGKTIKPSYSNFSRWYIAWILVAALYHLPSFQSMGVDMRMNLSLFLTIYVSSILFLLVFHIIFIGLWYIGLVARVAGRRPAILTILQNCAVISVACCVFYSHCGNRANMREKTFERRFSGWFTLWNKEERDSWLAKFVRMNEFKKQVCKSWFAPVGSANDYPFLSKWVIYGELTC...

XP_057798445.1
MREKTFERRFSGWFTLWNKEERDSWLAKFVRMNEFKKQVCKSWFAPVGSANDYPFLSKWVIYGELTCSGGSCADSPAEISPIYSLWATFIGLYIANYVVERSTGWALTHPVSQKESEKLKKKQMKPDFLDMVPWYSGTSADLFKTVFDLLVSVTVFVGRFDMRMMQAAMSKVEDAAKQDDLLYDQFSEHDELWFDFMADTGDGGNSSYSVARLLAQPFLRVQSNGSPIILPRSNLLLIGGDLAYPNPSEFTYERRLFRPF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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