当前解析结果
SmilChr03G003591| 统一新 Gene ID | SmilChr03G003591 |
|---|---|
| 名称 | SmilChr03G003591 |
| 描述 | DEAD-box ATP-dependent RNA helicase 7-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 54565047 - 54570287 / + |
| NCBI Gene ID | LOC131019009 |
|---|---|
| GeneID | 131019009 |
| locus_tag | - |
| NCBI Name | LOC131019009 |
| 原始查询 | SmilChr03G003591 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | DEAD-box ATP-dependent RNA helicase 7-like |
| 产物 | DEAD-box ATP-dependent RNA helicase 7-like |
| Arabidopsis | AT5G62190 (PRH75)DEAD box RNA helicase (PRH75) [Source:NCBI gene (formerly Entrezgene);Acc:836340] identity=68.5; qcov=0.903; evalue=0; confidence=high |
| Rice | Os03g0827700 (OsRH3)- identity=40.9; qcov=0.858; evalue=4.6e-115; confidence=medium |
| GO | GO:0003723 (RNA binding); GO:0004386 (helicase activity); GO:0005524 (ATP binding) |
| KEGG | - |
| Pfam | PF00270 (DEAD); PF00271 (Helicase_C); PF08152 (GUCT); PF26142 (DD_DDX21-DDX50) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019009 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803677.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057803677.1 |
| 3 | Nucleolus | 核仁 | 0.20000 | XP_057803677.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803677.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803677.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:54565419 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr3:54566407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C53,D2 |
Chr3:54567158 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,B82 |
Chr3:54567267 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
Chr3:54567486 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A24,B82 |
Chr3:54567930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr3:54569499 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B10,C22 |
Chr3:54569608 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B40 |
Chr3:54569925 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | C25 |
Chr3:54569925 |
GT |
G |
1bp_deletion | CDS_variant | 1 | C25 |
Chr3:54569927 |
GGT |
G |
2bp_deletion | frameshift_variant | 1 | C25 |
Chr3:54569927 |
GGT |
G |
2bp_deletion | CDS_variant | 1 | C25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803677.1PF00270
DEAD 75-251 aa
PF00271
Helicase_C 293-395 aa
PF26142
DD_DDX21-DDX50 429-482 aa
PF08152
GUCT 484-579 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803677.1 |
Pfam | PF00270 |
DEAD | Domain | 75 | 251 | 1.8e-45 | 155.4 | DEAD/DEAH box helicase |
XP_057803677.1 |
Pfam | PF00271 |
Helicase_C | Domain | 293 | 395 | 1.4e-26 | 93.6 | Helicase conserved C-terminal domain |
XP_057803677.1 |
Pfam | PF26142 |
DD_DDX21-DDX50 | Domain | 429 | 482 | 6.8e-16 | 58.8 | DDX21/DDX50 dimerisation domain |
XP_057803677.1 |
Pfam | PF08152 |
GUCT | Domain | 484 | 579 | 1e-30 | 106.5 | GUCT (NUC152) domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。