Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr03G003605`

Chromosome: Chr03 Coordinates: 54698558-54702926 Strand: + Biotype: protein_coding

Basic Information

Standard Gene ID	`SmilChr03G003605`
Name	SmilChr03G003605
Description	quinolinate phosphoribosyltransferase [decarboxylating] 1a-like
Chromosome / SeqID	Chr03 / NC_080389.1
Coordinates and Strand	54698558 - 54702926 / `+`

ID Mapping

NCBI Gene ID	`LOC131014482`
GeneID	`131014482`
locus_tag	`-`
NCBI Name	`LOC131014482`
Original query	`SmilChr03G003605`

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Functional Annotation

Source	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
Description	quinolinate phosphoribosyltransferase [decarboxylating] 1a-like
Product	quinolinate phosphoribosyltransferase [decarboxylating] 1a-like
Arabidopsis	`AT2G01350` (QPT) quinolinate phoshoribosyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:814663] identity=79.5; qcov=0.983; evalue=0; confidence=high
Rice	`Os09g0553600` - identity=75.9; qcov=0.906; evalue=0; confidence=high
GO	GO:0004514 (nicotinate-nucleotide diphosphorylase (carboxylating) activity); GO:0005737 (cytoplasm); GO:0009435 (NAD+ biosynthetic process); GO:0034213 (quinolinate catabolic process)
KEGG	smil00760 (Nicotinate and nicotinamide metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF01729 (QRPTase_C); PF02749 (QRPTase_N)
InterPro	-
eggNOG	-
NR	GeneID:131014482

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Subcellular Localization Top 5

Rank	Location	Chinese	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057798458.1`
2	Cytosol	细胞质基质	0.80000	`XP_057798457.1`
3	Chloroplast stroma	叶绿体基质	0.60000	`XP_057798458.1`
4	Nucleus	细胞核	0.00000	`XP_057798457.1`
5	Chromosome	染色体	0.00000	`XP_057798457.1`

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EMS Mutant Variants

The table shows the first 12 candidate EMS variants for this gene. Open the EMS module for full filtering and downloads.

Position	REF	ALT	Type	Effect	Carriers	Samples
`Chr3:54698624`	`C`	`CT`	1bp_insertion	frameshift_variant	101	A10,A11,A13,A15,A19,A2,A20,A21,A25,A3,A4,A6,B1,B10,B103,B105,B109,B11,B111,B117,B119,B12,B121,B122,B124,B126,B128,B132,B134,B138,B139,B140,B16,B2,B21,B26,B28,B29,B30,B33,B34,B36,B4,B46,B53,B55,B59,B65,B7,B71,B73,B74,B79,B80,B86,B88,B93,B95,B98,C1,C15,C19,C20,C28,C29,C3,C31,C32,C34,C35,C39,C45,C49,C5,C53,C54,C58,C59,C6,C60,C61,C62,C64,C66,C68,C7,C70,C71,C74,C76,C78,C81,C82,C85,C86,C87,D1,D2,D3,D6,D9
`Chr3:54698649`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B34,B37,B59

Open EMS variants

Predicted Protein Domains

Domain results are from the Pfam-A HMM database and HMMER hmmscan; positions are amino-acid coordinates on the corresponding protein sequence.

XP_057798457.1

370 aa

185

370

QRPTase_N

QRPTase_C

PF02749 QRPTase_N 86-171 aa PF01729 QRPTase_C 173-354 aa

XP_057798458.1

352 aa

176

352

QRPTase_N

QRPTase_C

PF02749 QRPTase_N 68-153 aa PF01729 QRPTase_C 155-336 aa

Protein ID	Source	Domain ID	Domain name	Type	Start aa	End aa	E-value	Score	Description
`XP_057798457.1`	Pfam	`PF02749`	QRPTase_N	Domain	86	171	4.5e-22	78.8	Quinolinate phosphoribosyl transferase, N-terminal domain
`XP_057798457.1`	Pfam	`PF01729`	QRPTase_C	Domain	173	354	2.2e-51	174.7	Quinolinate phosphoribosyl transferase, C-terminal domain
`XP_057798458.1`	Pfam	`PF02749`	QRPTase_N	Domain	68	153	4.3e-22	78.8	Quinolinate phosphoribosyl transferase, N-terminal domain
`XP_057798458.1`	Pfam	`PF01729`	QRPTase_C	Domain	155	336	2.3e-51	174.6	Quinolinate phosphoribosyl transferase, C-terminal domain

cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

2 records

Download cDNA FASTA

XM_057942474.1
AAGGCCTTTTCTTAATAAAAATACAGCTCAATTCTTTAAACAAACATGGGCAAAGATTTAAATAATCTGGCCCAAACCCACGCACACATCACACTCGCAGACCGCCGCGTCGCCGCCGTCTGTCGACTCACGGCCAAACCCTCTTTCCTGATTCGATTGGTGGTGAAAATGTCAGCCACAGCCACAAGGAACACGGGAACTGCGGCCGTGTCCATAGCCGTGAAGCCGCCGGCTCATCCCACTTATGACCTCAAGAGTGT...

XM_057942475.1
AAACATGGGCAAAGATTTAAATAATCTGGCCCAAACCCACGCACACATCACACTCGCAGACCGCCGCGTCGCCGCCGTCTGTCGACTCACGGCCAAACCCTCTTTCCTGATTCGGTACTCATCCCTACCCAATTTTTTTTGAAAGATAAAACCGAATTAAATTGCAAAAACCGAAAAATCGAACCATATTTCTATCTTATTTGAGTTGTGCGCAGTGCGAAGAATCATTGTCTACGCTGCAAGCGCAGAAAGCATCGTTT...

CDS

2 records

Download CDS FASTA

LOC131014482
ATGGGCAAAGATTTAAATAATCTGGCCCAAACCCACGCACACATCACACTCGCAGACCGCCGCGTCGCCGCCGTCTGTCGACTCACGGCCAAACCCTCTTTCCTGATTCGATTGGTGGTGAAAATGTCAGCCACAGCCACAAGGAACACGGGAACTGCGGCCGTGTCCATAGCCGTGAAGCCGCCGGCTCATCCCACTTATGACCTCAAGAGTGTTATACAGCTTGCGCTGTCTGAGGACGCCGGTGATCTAGGGGATGT...

LOC131014482
ATGATTACCGCTTTTTCTCTTTCCCCACTTTGTTCGCTCATTCCCTCAGCCCAAAGATTGGTGGTGAAAATGTCAGCCACAGCCACAAGGAACACGGGAACTGCGGCCGTGTCCATAGCCGTGAAGCCGCCGGCTCATCCCACTTATGACCTCAAGAGTGTTATACAGCTTGCGCTGTCTGAGGACGCCGGTGATCTAGGGGATGTGACTTGTAAAGCAACGATTCCTGATGAAATGGAAGTGGAAGCCTATTTTTTGGC...

Protein

2 records

Download Protein FASTA

XP_057798457.1
MGKDLNNLAQTHAHITLADRRVAAVCRLTAKPSFLIRLVVKMSATATRNTGTAAVSIAVKPPAHPTYDLKSVIQLALSEDAGDLGDVTCKATIPDEMEVEAYFLAKEDGIVAGIGLAEMVFSEVDPSLKVEWYRKDGDNVHKGLQFGKVHGRAHSIVVAERVVLNFMQRMSGIATLTKAMADAAEPAYILETRKTAPGLRLMDKWAVLIGGGQNHRMGLFDMVMIKDNHISIAGGVTNALKSVDLYLEQNNLQMGVEVET...

XP_057798458.1
MITAFSLSPLCSLIPSAQRLVVKMSATATRNTGTAAVSIAVKPPAHPTYDLKSVIQLALSEDAGDLGDVTCKATIPDEMEVEAYFLAKEDGIVAGIGLAEMVFSEVDPSLKVEWYRKDGDNVHKGLQFGKVHGRAHSIVVAERVVLNFMQRMSGIATLTKAMADAAEPAYILETRKTAPGLRLMDKWAVLIGGGQNHRMGLFDMVMIKDNHISIAGGVTNALKSVDLYLEQNNLQMGVEVETRTLEEVTQVLLYASTTKT...

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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