当前解析结果
SmilChr03G003665| 统一新 Gene ID | SmilChr03G003665 |
|---|---|
| 名称 | SmilChr03G003665 |
| 描述 | folate-biopterin transporter 1, chloroplastic-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 55493349 - 55495912 / - |
| NCBI Gene ID | LOC131019025 |
|---|---|
| GeneID | 131019025 |
| locus_tag | - |
| NCBI Name | LOC131019025 |
| 原始查询 | SmilChr03G003665 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | folate-biopterin transporter 1, chloroplastic-like |
| 产物 | folate-biopterin transporter 1%2C chloroplastic-like |
| Arabidopsis | AT2G32040 (AT2G32040)Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:817764] identity=75.6; qcov=0.61; evalue=1.25e-86; confidence=high |
| Rice | Os03g0795000- identity=68.5; qcov=0.61; evalue=9.45e-84; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF03017 (Transposase_23); PF03092 (BT1); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019025 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 0.80000 | XP_057803696.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.60000 | XP_057803696.1 |
| 3 | Nucleus membrane | 核膜 | 0.20000 | XP_057803696.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057803696.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057803696.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:55493627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A1,A13,A19,B119,C3 |
Chr3:55493771 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B31,C8 |
Chr3:55493771 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B31,C8 |
Chr3:55493773 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr3:55493774 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:55493781 |
A |
AAT |
2bp_insertion | frameshift_variant | 5 | A7,B122,B2,B33,B78 |
Chr3:55493781 |
A |
AAT |
2bp_insertion | CDS_variant | 5 | A7,B122,B2,B33,B78 |
Chr3:55493792 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A24,D11 |
Chr3:55493835 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B102,C76 |
Chr3:55493847 |
C |
T |
EMS_canonical_SNV | stop_gained | 32 | B1,B10,B118,B119,B133,B21,B24,B36,B40,B42,B43,B47,B50,B53,B65,B73,B8,B89,B9,C15,C17,C27,C36,C5,C50,C51,C55,C61,C77,C80,C83,C9 |
Chr3:55493848 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | B86,B88,B97,C22,D8 |
Chr3:55493848 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B86,B88,B97,C22,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803696.1PF03092
BT1 36-245 aa
PF07690
MFS_1 40-207 aa
PF03017
Transposase_23 241-306 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803696.1 |
Pfam | PF03092 |
BT1 | Family | 36 | 245 | 3e-59 | 201.6 | BT1 family |
XP_057803696.1 |
Pfam | PF07690 |
MFS_1 | Family | 40 | 207 | 2.5e-10 | 40.6 | Major Facilitator Superfamily |
XP_057803696.1 |
Pfam | PF03017 |
Transposase_23 | Domain | 241 | 306 | 7.4e-12 | 45.6 | TNP1/EN/SPM transposase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。