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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G003672

染色体: Chr03 坐标: 55558523-55575901 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G003672
名称SmilChr03G003672
描述uncharacterized SmilChr03G003672
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向55558523 - 55575901 / +

ID 对照

NCBI Gene IDLOC131014538
GeneID131014538
locus_tag-
NCBI NameLOC131014538
原始查询SmilChr03G003672

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Plant transposase (Ptta/En/Spm family) [Source:NCBI gene (formerly Entrezgene);Acc:840721]; symbol=AT1G40087; hit=AT1G40087; species=arabidopsis; confidence=weak
产物Plant transposase (Ptta/En/Spm family) [Source:NCBI gene (formerly Entrezgene);Acc:840721]; symbol=AT1G40087; hit=AT1G40087; species=arabidopsis; confidence=weak
ArabidopsisAT1G40087 (AT1G40087)
Plant transposase (Ptta/En/Spm family) [Source:NCBI gene (formerly Entrezgene);Acc:840721]
identity=23.1; qcov=0.923; evalue=1.51e-13; confidence=weak
RiceOs02g0129000
-
identity=23.6; qcov=0.737; evalue=1.41e-11; confidence=weak
GO-
KEGG-
PfamPF03004 (Transposase_24)
InterPro-
eggNOG-
NRGeneID:131014538

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057798512.1
2 Chromosome 染色体 0.00000 XP_057798512.1
3 Centromere 着丝粒 0.00000 XP_057798512.1
4 Chromatin 染色质 0.00000 XP_057798512.1
5 Telomere 端粒 0.00000 XP_057798512.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:55560652 C T EMS_canonical_SNV CDS_variant 3 B85,C38,C67
Chr3:55560653 C T EMS_canonical_SNV CDS_variant 4 A10,A20,B57,B67
Chr3:55560688 C T EMS_canonical_SNV CDS_variant 3 B113,B7,C60
Chr3:55560689 G A EMS_canonical_SNV CDS_variant 4 A10,A20,B57,B67
Chr3:55560758 C T EMS_canonical_SNV CDS_variant 2 B125,B67
Chr3:55561011 G A EMS_canonical_SNV CDS_variant 2 B7,C60
Chr3:55561034 C T EMS_canonical_SNV CDS_variant 2 A10,B7
Chr3:55561036 G A EMS_canonical_SNV CDS_variant 1 A10
Chr3:55561037 G A EMS_canonical_SNV CDS_variant 1 A10
Chr3:55561295 G A EMS_canonical_SNV CDS_variant 3 B18,B21,C53
Chr3:55561297 C T EMS_canonical_SNV CDS_variant 4 A8,B136,C5,C70
Chr3:55561379 G A EMS_canonical_SNV CDS_variant 2 C36,C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798512.1
518 aa
N
1
259
518
Transposase_24
C
PF03004 Transposase_24 277-404 aa
XP_057798513.1
518 aa
N
1
259
518
Transposase_24
C
PF03004 Transposase_24 277-404 aa
XP_057798514.1
518 aa
N
1
259
518
Transposase_24
C
PF03004 Transposase_24 277-404 aa
XP_057798515.1
518 aa
N
1
259
518
Transposase_24
C
PF03004 Transposase_24 277-404 aa
XP_057798516.1
518 aa
N
1
259
518
Transposase_24
C
PF03004 Transposase_24 277-404 aa
XP_057798517.1
518 aa
N
1
259
518
Transposase_24
C
PF03004 Transposase_24 277-404 aa
XP_057798519.1
403 aa
N
1
202
403
Transposase_24
C
PF03004 Transposase_24 162-289 aa
XP_057798520.1
403 aa
N
1
202
403
Transposase_24
C
PF03004 Transposase_24 162-289 aa
XP_057798521.1
403 aa
N
1
202
403
Transposase_24
C
PF03004 Transposase_24 162-289 aa
XP_057798522.1
403 aa
N
1
202
403
Transposase_24
C
PF03004 Transposase_24 162-289 aa
XP_057798523.1
403 aa
N
1
202
403
Transposase_24
C
PF03004 Transposase_24 162-289 aa
XP_057798524.1
403 aa
N
1
202
403
Transposase_24
C
PF03004 Transposase_24 162-289 aa
XP_057798525.1
403 aa
N
1
202
403
Transposase_24
C
PF03004 Transposase_24 162-289 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057798512.1 Pfam PF03004 Transposase_24 Family 277 404 1.8e-23 84.0 Plant transposase (Ptta/En/Spm family)
XP_057798513.1 Pfam PF03004 Transposase_24 Family 277 404 1.8e-23 84.0 Plant transposase (Ptta/En/Spm family)
XP_057798514.1 Pfam PF03004 Transposase_24 Family 277 404 1.8e-23 84.0 Plant transposase (Ptta/En/Spm family)
XP_057798515.1 Pfam PF03004 Transposase_24 Family 277 404 1.8e-23 84.0 Plant transposase (Ptta/En/Spm family)
XP_057798516.1 Pfam PF03004 Transposase_24 Family 277 404 1.8e-23 84.0 Plant transposase (Ptta/En/Spm family)
XP_057798517.1 Pfam PF03004 Transposase_24 Family 277 404 1.8e-23 84.0 Plant transposase (Ptta/En/Spm family)
XP_057798519.1 Pfam PF03004 Transposase_24 Family 162 289 1.1e-23 84.6 Plant transposase (Ptta/En/Spm family)
XP_057798520.1 Pfam PF03004 Transposase_24 Family 162 289 1.1e-23 84.6 Plant transposase (Ptta/En/Spm family)
XP_057798521.1 Pfam PF03004 Transposase_24 Family 162 289 1.1e-23 84.6 Plant transposase (Ptta/En/Spm family)
XP_057798522.1 Pfam PF03004 Transposase_24 Family 162 289 1.1e-23 84.6 Plant transposase (Ptta/En/Spm family)
XP_057798523.1 Pfam PF03004 Transposase_24 Family 162 289 1.1e-23 84.6 Plant transposase (Ptta/En/Spm family)
XP_057798524.1 Pfam PF03004 Transposase_24 Family 162 289 1.1e-23 84.6 Plant transposase (Ptta/En/Spm family)
XP_057798525.1 Pfam PF03004 Transposase_24 Family 162 289 1.1e-23 84.6 Plant transposase (Ptta/En/Spm family)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

13 records

下载 cDNA FASTA
XM_057942529.1
ATTGCCAATTTGCTTAATTGAAGTTAGTTCCAGCGTGACATTGGAGAGCACAAAAAGCTTCAGCTTAGTTCCAGCAATTCACCATCACACTCGAAAAACAAGCAAACTCCTCCGATTTGAATTTGTGAATTTGTGGTTTCCTTCACCTGAGTTCCTCCGATTTGAATCTCTCATCTCAAACTCTGAGCTCCGAACTTCAATTTAATCCCCAGAGAGAGATTGATCCGAGCTCAAAACTCTCCGACATCGTCGTAGCAGCA...
XM_057942536.1
ATTGCCAATTTGCTTAATTGAAGTTAGTTCCAGCGTGACATTGGAGAGCACAAAAAGCTTCAGCTTAGTTCCAGCAATTCACCATCACACTCGAAAAACAAGCAAACTCCTCCGATTTGAATTTGTGAATTTGTGGTTTCCTTCACCTGAGTTCCTCCGATTTGAATCTCTCATCTCAAACTCTGAGCTCCGAACTTCAATTTAATCCCCAGAGAGAGATTGATCCGAGCTCAAAACTCTCCGACATCGTCGTAGCAGCA...

CDS

13 records

下载 CDS FASTA
LOC131014538
ATGTTTCGATCCAAAGTGACAATATCCCAGTACAAAAAAGGCCCTCCAACAACAAATTGTAGTTCTCTACCGCCACCATCTTCCACATTCTCACAACCTCTTACTATTGATTCACATCATTCTCCAGATTCTATTTTCAACCACTTGCGTCCACCTTCATTAAATAGTAATTACACACAGCTAAGCCCCCTTCGGCATTCACCATCCCACCTTCATTCTTCCTCCGAGACAGATGATAGTGAATCTAACAACAATGATGA...
LOC131014538
ATGTTTCGATCCAAAGTGACAATATCCCAGTACAAAAAAGGCCCTCCAACAACAAATTGTAGTTCTCTACCGCCACCATCTTCCACATTCTCACAACCTCTTACTATTGATTCACATCATTCTCCAGATTCTATTTTCAACCACTTGCGTCCACCTTCATTAAATAGTAATTACACACAGCTAAGCCCCCTTCGGCATTCACCATCCCACCTTCATTCTTCCTCCGAGACAGATGATAGTGAATCTAACAACAATGATGA...

Protein

13 records

下载 Protein FASTA
XP_057798512.1
MFRSKVTISQYKKGPPTTNCSSLPPPSSTFSQPLTIDSHHSPDSIFNHLRPPSLNSNYTQLSPLRHSPSHLHSSSETDDSESNNNDDNSHVQVSESNVLENIEIVDDKGHVKLTRMGMKASDVFKLAKGLRILVNVNEHGQPIRAARRVLTRYMMKLVKQPNLCPPDLNDFNDVKHAFGVELLRAVREKFYIPRHENVDNVLIALMGIKFRNNKYRIRKEIYKKTHARLREKLKAVLEASGVHGEELEHRVTFHEFREDQ...
XP_057798513.1
MFRSKVTISQYKKGPPTTNCSSLPPPSSTFSQPLTIDSHHSPDSIFNHLRPPSLNSNYTQLSPLRHSPSHLHSSSETDDSESNNNDDNSHVQVSESNVLENIEIVDDKGHVKLTRMGMKASDVFKLAKGLRILVNVNEHGQPIRAARRVLTRYMMKLVKQPNLCPPDLNDFNDVKHAFGVELLRAVREKFYIPRHENVDNVLIALMGIKFRNNKYRIRKEIYKKTHARLREKLKAVLEASGVHGEELEHRVTFHEFREDQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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