当前解析结果
SmilChr03G003675| 统一新 Gene ID | SmilChr03G003675 |
|---|---|
| 名称 | SmilChr03G003675 |
| 描述 | uncharacterized SmilChr03G003675 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 55584166 - 55587978 / + |
| NCBI Gene ID | LOC131014541 |
|---|---|
| GeneID | 131014541 |
| locus_tag | - |
| NCBI Name | LOC131014541 |
| 原始查询 | SmilChr03G003675 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0704400; species=rice; confidence=low |
| 产物 | hit=Os06g0704400; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=25.8; qcov=0.612; evalue=4.95e-61; confidence=low |
| Rice | Os06g0704400- identity=31.6; qcov=0.828; evalue=6.31e-110; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005507 (copper ion binding); GO:0006355 (regulation of DNA-templated transcription); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE); PF26130 (PB1-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014541 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057798526.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057798526.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057798526.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057798526.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057798526.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:55584982 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B12,B126,B42,B43 |
Chr3:55585027 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A20,B126 |
Chr3:55585244 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr3:55585590 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A18,B33 |
Chr3:55585637 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B70,B71,B72 |
Chr3:55585679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,B118,B22,B73 |
Chr3:55585794 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C75,D1 |
Chr3:55586078 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr3:55586128 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C75,D1,D10 |
Chr3:55586180 |
C |
CT |
1bp_insertion | frameshift_variant | 2 | B41,B50 |
Chr3:55586180 |
C |
CT |
1bp_insertion | CDS_variant | 2 | B41,B50 |
Chr3:55586337 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B130,C28,C64,C66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798526.1PF26130
PB1-like 5-99 aa
PF03108
DBD_Tnp_Mut 285-348 aa
PF10551
MULE 477-572 aa
PF04434
SWIM 724-754 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798526.1 |
Pfam | PF26130 |
PB1-like | Domain | 5 | 99 | 9.2e-17 | 61.9 | PB1-like domain |
XP_057798526.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 285 | 348 | 3.7e-07 | 30.4 | MuDR family transposase |
XP_057798526.1 |
Pfam | PF10551 |
MULE | Domain | 477 | 572 | 7.3e-13 | 49.4 | MULE transposase domain |
XP_057798526.1 |
Pfam | PF04434 |
SWIM | Domain | 724 | 754 | 7.6e-10 | 38.8 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。