当前解析结果
SmilChr03G003679| 统一新 Gene ID | SmilChr03G003679 |
|---|---|
| 名称 | SmilChr03G003679 |
| 描述 | sorbitol dehydrogenase |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 55634573 - 55638163 / + |
| NCBI Gene ID | LOC131014543 |
|---|---|
| GeneID | 131014543 |
| locus_tag | - |
| NCBI Name | LOC131014543 |
| 原始查询 | SmilChr03G003679 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sorbitol dehydrogenase |
| 产物 | sorbitol dehydrogenase |
| Arabidopsis | AT5G51970 (AT5G51970)GroES-like zinc-binding alcohol dehydrogenase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835272] identity=82.5; qcov=0.997; evalue=0; confidence=high |
| Rice | Os08g0545200 (OsDH1)- identity=79.8; qcov=0.977; evalue=0; confidence=high |
| GO | GO:0008270 (zinc ion binding); GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor) |
| KEGG | smil00040 (Pentose and glucuronate interconversions - Salvia miltiorrhiza (redroot sage)); smil00051 (Fructose and mannose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00107 (ADH_zinc_N); PF08240 (ADH_N); PF13602 (ADH_zinc_N_2); PF16912 (Glu_dehyd_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014543 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057798527.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057798527.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057798527.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057798527.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057798527.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:55634689 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B15,B54,C60,C69 |
Chr3:55635641 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A11,A24,B82 |
Chr3:55635683 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,B112,C58,C85 |
Chr3:55635688 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B114,D11 |
Chr3:55635695 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B57 |
Chr3:55636312 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B42,B43,B44,B61,C38 |
Chr3:55636383 |
C |
CAG |
2bp_insertion | frameshift_variant | 2 | B97,C86 |
Chr3:55636383 |
C |
CAG |
2bp_insertion | CDS_variant | 2 | B97,C86 |
Chr3:55637510 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A22,C29 |
Chr3:55637554 |
G |
GT |
1bp_insertion | stop_gained,frameshift_variant | 1 | B87 |
Chr3:55637554 |
G |
GT |
1bp_insertion | CDS_variant | 1 | B87 |
Chr3:55637865 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A10,B112,B114,C58,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798527.1PF08240
ADH_N 31-145 aa
PF16912
Glu_dehyd_C 152-288 aa
PF00107
ADH_zinc_N 183-314 aa
PF13602
ADH_zinc_N_2 216-347 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798527.1 |
Pfam | PF08240 |
ADH_N | Domain | 31 | 145 | 6.5e-28 | 97.8 | Alcohol dehydrogenase GroES-like domain |
XP_057798527.1 |
Pfam | PF16912 |
Glu_dehyd_C | Family | 152 | 288 | 5.9e-10 | 39.7 | Glucose dehydrogenase C-terminus |
XP_057798527.1 |
Pfam | PF00107 |
ADH_zinc_N | Domain | 183 | 314 | 5.9e-26 | 91.7 | Zinc-binding dehydrogenase |
XP_057798527.1 |
Pfam | PF13602 |
ADH_zinc_N_2 | Domain | 216 | 347 | 2.5e-07 | 32.4 | Zinc-binding dehydrogenase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。