Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003691`

染色体: Chr03 坐标: 55852340-55858688 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003691`
名称	SmilChr03G003691
描述	probable transcriptional regulator SLK2
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	55852340 - 55858688 / `+`

ID 对照

NCBI Gene ID	`LOC131014557`
GeneID	`131014557`
locus_tag	`-`
NCBI Name	`LOC131014557`
原始查询	`SmilChr03G003691`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable transcriptional regulator SLK2
产物	probable transcriptional regulator SLK2
Arabidopsis	`AT5G62090` (SLK2) SEUSS-like 2 [Source:NCBI gene (formerly Entrezgene);Acc:836329] identity=55.6; qcov=0.672; evalue=0; confidence=high
Rice	`Os06g0126000` (OsSEU3) - identity=43.6; qcov=0.931; evalue=0; confidence=medium
GO	GO:0000122 (negative regulation of transcription by RNA polymerase II); GO:0005634 (nucleus); GO:0005667 (transcription regulator complex); GO:0045944 (positive regulation of transcription by RNA polymerase II)
KEGG	-
Pfam	PF01803 (LIM_bind)
InterPro	-
eggNOG	-
NR	GeneID:131014557

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057798547.1`
2	Chromosome	染色体	0.00000	`XP_057798547.1`
3	Centromere	着丝粒	0.00000	`XP_057798547.1`
4	Chromatin	染色质	0.00000	`XP_057798547.1`
5	Telomere	端粒	0.00000	`XP_057798547.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:55853584`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B79,C45,D3
`Chr3:55853618`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr3:55853620`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr3:55853725`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:55856996`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B23,B57
`Chr3:55857994`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:55858139`	`TC`	`T`	1bp_deletion	frameshift_variant	1	B93
`Chr3:55858139`	`TC`	`T`	1bp_deletion	CDS_variant	1	B93
`Chr3:55858204`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:55858384`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,B75,C54

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798547.1

854 aa

427

854

LIM_bind

PF01803 LIM_bind 303-563 aa

XP_057798548.1

854 aa

427

854

LIM_bind

PF01803 LIM_bind 303-563 aa

XP_057798549.1

854 aa

427

854

LIM_bind

PF01803 LIM_bind 303-563 aa

XP_057798550.1

854 aa

427

854

LIM_bind

PF01803 LIM_bind 303-563 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798547.1`	Pfam	`PF01803`	LIM_bind	Family	303	563	1.9e-64	218.2	LIM-domain binding protein
`XP_057798548.1`	Pfam	`PF01803`	LIM_bind	Family	303	563	1.9e-64	218.2	LIM-domain binding protein
`XP_057798549.1`	Pfam	`PF01803`	LIM_bind	Family	303	563	1.9e-64	218.2	LIM-domain binding protein
`XP_057798550.1`	Pfam	`PF01803`	LIM_bind	Family	303	563	1.9e-64	218.2	LIM-domain binding protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057942565.1
CAACACCGAAAAATCTTTTCTTTTTTACCTATTTTTTTTTTCTTTTTGCTAAATTCCTTCTGATTGCTCTCTCTGTTTCCAGAATCCAAAGGAGTAGTCTTTTTAGACTTTTTCCAAAGGTGAAACCGAGTGGGCATGGAAGAAGTGGTGAAAAAGTACTCATAGTTTTGTGTTGACTCGGGTTCCTGTTCTGAGAGGATGAAGCTGGTCATTTCTTCTCTTTAGCTAGGCTCTTAATAAGTGTCGTCTTTTGTATGTTT...

XM_057942564.1
TCTTTTCTTTTTTACCTATTTTTTTTTTCTTTTTGCTAAATTCCTTCTGATTGCTCTCTCTGTTTCCAGTTTGAAAGTTTCCATTTTGGCTGGCGTGTTCCAAGTTCAAACCTTTAATCTTTGTCCCGTTCTAATATATTGTGCCAATTAATCCAAAGGAGTAGTCTTTTTAGACTTTTTCCAAAGGTGAAACCGAGTGGGCATGGAAGAAGTGGTGAAAAAGTACTCATAGTTTTGTGTTGACTCGGGTTCCTGTTCTG...

CDS

4 records

下载 CDS FASTA

LOC131014557
ATGGTGCCTTCTCGGGTGGTTGGTGGAATGGCACAATCATCTTCAAGTTCTGGAATATTTTTTCAAGGAGATGGGCAATCGCAGGTTGCAGGAAATTCTCAGTTGAGTTCAAATTTTGGGAACTCTTCACATGCACCTGGACATGCTCGAGCCAATATGGGACCGCTTCCGGGGGATGTCAGCAACACAGTCTTCAACAGTGTGGCAACCTCAGGACCCAGCATTGGGGCAAGTTCTTTGGTCACTGATGCCAATTCAGG...

Protein

4 records

下载 Protein FASTA

XP_057798547.1
MVPSRVVGGMAQSSSSSGIFFQGDGQSQVAGNSQLSSNFGNSSHAPGHARANMGPLPGDVSNTVFNSVATSGPSIGASSLVTDANSGLSGGPHLQRSASFNTDSYMRLPASPMSFTSNNVSITGSSVMDGSAVVPQSSNQEPGSQAHQNQQHQGASSATSLPTSRMGQVHIPGGPRVPNSFIQDPTTISQLQKKPRLDIKQEDILQQQVLQQLLQKQDPMHLQNTNPQLQALIQQQRLRQHQQQQQHREQQQLLQSMPPM...

XP_057798548.1
MVPSRVVGGMAQSSSSSGIFFQGDGQSQVAGNSQLSSNFGNSSHAPGHARANMGPLPGDVSNTVFNSVATSGPSIGASSLVTDANSGLSGGPHLQRSASFNTDSYMRLPASPMSFTSNNVSITGSSVMDGSAVVPQSSNQEPGSQAHQNQQHQGASSATSLPTSRMGQVHIPGGPRVPNSFIQDPTTISQLQKKPRLDIKQEDILQQQVLQQLLQKQDPMHLQNTNPQLQALIQQQRLRQHQQQQQHREQQQLLQSMPPM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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