Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003720`

染色体: Chr03 坐标: 56212604-56215459 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003720`
名称	SmilChr03G003720
描述	F-box protein At5g52880
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	56212604 - 56215459 / `-`

ID 对照

NCBI Gene ID	`LOC131014583`
GeneID	`131014583`
locus_tag	`-`
NCBI Name	`LOC131014583`
原始查询	`SmilChr03G003720`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box protein At5g52880
产物	F-box protein At5g52880
Arabidopsis	`AT5G52880` (AT5G52880) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:835365] identity=40.8; qcov=0.878; evalue=2.52e-59; confidence=medium
Rice	`Os05g0526300` (OsFbox268) - identity=37.1; qcov=0.993; evalue=3.23e-61; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF12937 (F-box-like); PF24104 (At5g52880_ARM)
InterPro	-
eggNOG	-
NR	GeneID:131014583

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057798574.1`
2	Chromosome	染色体	0.00000	`XP_057798574.1`
3	Centromere	着丝粒	0.00000	`XP_057798574.1`
4	Chromatin	染色质	0.00000	`XP_057798574.1`
5	Telomere	端粒	0.00000	`XP_057798574.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:56212807`	`AT`	`A`	1bp_deletion	frameshift_variant	47	A11,A13,A16,A19,A24,A9,B107,B11,B111,B118,B123,B132,B134,B138,B14,B17,B2,B24,B32,B34,B35,B36,B45,B52,B54,B64,B65,B75,B77,B80,B86,B93,B95,C19,C26,C27,C3,C32,C46,C61,C63,C68,C71,C76,C78,C79,C81
`Chr3:56212941`	`T`	`TTA`	2bp_insertion	frameshift_variant	3	B117,B140,C27
`Chr3:56212941`	`T`	`TTA`	2bp_insertion	CDS_variant	3	B117,B140,C27
`Chr3:56212952`	`AT`	`A`	1bp_deletion	frameshift_variant	99	A1,A14,A15,A16,A18,A21,A22,A23,A3,A5,A7,A8,B1,B10,B103,B109,B114,B115,B119,B12,B129,B13,B133,B134,B136,B137,B20,B23,B26,B27,B29,B3,B37,B38,B39,B4,B40,B41,B42,B43,B44,B48,B50,B51,B57,B59,B60,B62,B68,B69,B7,B71,B73,B75,B76,B8,B85,B87,B88,B9,B94,B97,B98,B99,C1,C13,C14,C15,C2,C24,C29,C33,C37,C38,C40,C42,C43,C44,C48,C49,C50,C52,C54,C55,C58,C62,C72,C77,C79,C80,C82,C83,C86,C87,C9,D1,D10,D11,D9
`Chr3:56212994`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr3:56213021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B90,B92
`Chr3:56213026`	`C`	`CT`	1bp_insertion	frameshift_variant	4	B1,B101,B17,D8
`Chr3:56213026`	`C`	`CT`	1bp_insertion	CDS_variant	4	B1,B101,B17,D8
`Chr3:56213033`	`G`	`GC`	1bp_insertion	frameshift_variant	100	A1,A14,A15,A16,A18,A21,A22,A23,A3,A5,A7,A8,B1,B10,B103,B109,B114,B115,B119,B12,B129,B13,B133,B134,B136,B137,B20,B23,B26,B27,B29,B3,B31,B37,B38,B39,B4,B40,B41,B42,B43,B44,B48,B50,B51,B57,B59,B60,B62,B68,B69,B7,B71,B73,B75,B76,B8,B85,B87,B88,B9,B94,B97,B98,B99,C1,C13,C14,C15,C2,C24,C29,C33,C37,C38,C40,C42,C43,C44,C48,C49,C50,C52,C54,C55,C58,C62,C72,C77,C79,C80,C82,C83,C86,C87,C9,D1,D10,D11,D9
`Chr3:56213039`	`G`	`GAA`	2bp_insertion	frameshift_variant	160	A1,A13,A14,A15,A16,A18,A20,A21,A22,A23,A3,A5,A6,A7,A8,B1,B10,B100,B101,B103,B104,B106,B107,B108,B109,B112,B113,B114,B115,B119,B12,B125,B126,B129,B13,B130,B133,B134,B136,B137,B139,B15,B16,B20,B21,B23,B26,B27,B29,B3,B30,B31,B33,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B47,B48,B5,B50,B51,B55,B57,B59,B60,B62,B66,B68,B69,B7,B70,B71,B72,B73,B75,B76,B8,B80,B81,B84,B85,B87,B88,B9,B90,B92,B94,B97,B98,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C2,C22,C24,C25,C28,C29,C30,C32,C33,C37,C38,C39,C4,C40,C41,C42,C43,C44,C47,C48,C49,C50,C52,C53,C54,C55,C56,C57,C58,C59,C60,C62,C66,C68,C69,C72,C73,C74,C77,C79,C8,C80,C82,C83,C84,C86,C87,C9,D1,D10,D11,D2,D7,D9
`Chr3:56213042`	`GA`	`G`	1bp_deletion	frameshift_variant	153	A10,A11,A13,A16,A19,A2,A24,A3,A4,A6,A9,B1,B101,B104,B105,B107,B108,B109,B11,B110,B111,B113,B114,B115,B117,B118,B119,B121,B122,B123,B124,B127,B130,B131,B132,B134,B135,B138,B14,B140,B16,B17,B18,B19,B2,B20,B22,B24,B26,B28,B32,B33,B34,B35,B36,B37,B4,B40,B42,B43,B44,B45,B46,B48,B49,B51,B52,B53,B54,B56,B57,B58,B6,B60,B61,B63,B64,B65,B67,B70,B74,B75,B77,B78,B79,B8,B80,B81,B82,B83,B86,B89,B91,B93,B94,B95,B96,B99,C10,C11,C13,C15,C19,C21,C23,C25,C26,C27,C29,C3,C30,C31,C32,C33,C34,C36,C37,C39,C4,C41,C44,C45,C46,C47,C5,C51,C52,C53,C58,C61,C63,C64,C66,C68,C69,C7,C70,C71,C72,C75,C76,C78,C79,C8,C81,C85,D10,D3,D4,D5,D6,D8,D9
`Chr3:56213082`	`T`	`TCC`	2bp_insertion	frameshift_variant	1	D4

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798574.1

305 aa

152

305

At5g52880_ARM

F-box

F-box-like

PF24104 At5g52880_ARM 21-119 aa PF00646 F-box 129-170 aa PF12937 F-box-like 129-173 aa

XP_057798575.1

304 aa

152

304

At5g52880_ARM

F-box

F-box-like

PF24104 At5g52880_ARM 21-119 aa PF00646 F-box 129-170 aa PF12937 F-box-like 129-173 aa

XP_057798576.1

296 aa

148

296

At5g52880_ARM

F-box

F-box-like

PF24104 At5g52880_ARM 21-119 aa PF00646 F-box 129-170 aa PF12937 F-box-like 129-173 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798574.1`	Pfam	`PF24104`	At5g52880_ARM	Repeat	21	119	3e-40	137.4	F-box protein At5g52880 ARM repeat
`XP_057798574.1`	Pfam	`PF00646`	F-box	Domain	129	170	4.9e-09	36.5	F-box domain
`XP_057798574.1`	Pfam	`PF12937`	F-box-like	Domain	129	173	1.6e-15	57.3	F-box-like
`XP_057798575.1`	Pfam	`PF24104`	At5g52880_ARM	Repeat	21	119	3e-40	137.3	F-box protein At5g52880 ARM repeat
`XP_057798575.1`	Pfam	`PF00646`	F-box	Domain	129	170	4.8e-09	36.5	F-box domain
`XP_057798575.1`	Pfam	`PF12937`	F-box-like	Domain	129	173	1.6e-15	57.3	F-box-like
`XP_057798576.1`	Pfam	`PF24104`	At5g52880_ARM	Repeat	21	119	2.7e-40	137.5	F-box protein At5g52880 ARM repeat
`XP_057798576.1`	Pfam	`PF00646`	F-box	Domain	129	170	4.7e-09	36.5	F-box domain
`XP_057798576.1`	Pfam	`PF12937`	F-box-like	Domain	129	173	1.5e-15	57.4	F-box-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057942593.1
AAAAAATACAGTTAATTGAGTCATATTATCTTCCATTGTTAGAAGACATTGTACCAAAAAATTGTGCACTTCATTTCAATTACTACTACTCCACTATTTTATTAATGTGCTAAATCAAGCATATGTGAGATGGTTGATTTGTCGATTCCTCAGCAAACGGCGGTGAATTAGTTCTTCTAAATTTCTTCCGATCTGGAAATCTGCAGTTTTTGAGATGGTTACCCAGAATCGCAAAACCAATACTTCTGCAGTTGAGAGAT...

XM_057942591.1
ATTGAGTCATATTATCTTCCATTGTTAGAAGACATTGTACCAAAAAATTGTGCACTTCATTTCAATTACTACTACTCCACTATTTTATTAATGTGCTAAATCAAGCATATGTGAGATGGTTGATTTGTCGATTCCTCAGCAAACGGCGGTGAATTAGTTCTTCTAAATTTCTTCCGATCTGGAAATCTGCAGTTTTTGAGATGGTTACCCAGAATCGCAAAACCAATACTTCTGCAGTTGAGAGATTCAATAATCCAATT...

CDS

3 records

下载 CDS FASTA

LOC131014583
ATGGTTACCCAGAATCGCAAAACCAATACTTCTGCAGTTGAGAGATTCAATAATCCAATTGAACGATACCAATCTTTATCAATCAAAGAATGCCTCTCCAAACGCTCCCAATATTCCTTCGCATGTAAACAATTGAGCTTTCTTCTTAAAAATGCCTACTCCAAGTTCCCCAAAAATCTTCAATCGCTTATTTTTCAGGATACCATTTTCGCTTTCCGCCTTCTCCCCGAGATGCAGACGCAGTCAGCAATTTCAGCTGC...

Protein

3 records

下载 Protein FASTA

XP_057798574.1
MVTQNRKTNTSAVERFNNPIERYQSLSIKECLSKRSQYSFACKQLSFLLKNAYSKFPKNLQSLIFQDTIFAFRLLPEMQTQSAISAANSLLQSAEFALPKQKRALAVTEHKHAVVASKRKSKTNNEEGIDQLPQDVLVHVFGFLDVQSLLSASAVCRSWNGVAGDNCLWKLLYDTYFSNCESFVKNEGLGTIGASKNEMHQIDDITTFGVNYRFAFEAAYKDEKMGCCTGYCSSCRSIVWLDRNRCSNETNRRDEVKHQI...

XP_057798575.1
MVTQNRKTNTSAVERFNNPIERYQSLSIKECLSKRSQYSFACKQLSFLLKNAYSKFPKNLQSLIFQDTIFAFRLLPEMQTQSAISAANSLLQSAEFALPKQKRALAVTEHKHAVVASKRKSKTNNEEGIDQLPQDVLVHVFGFLDVQSLLSASAVCRSWNGVAGDNCLWKLLYDTYFSNCESFVKNEGLGTIGASKNEMHQIDDITTFGVNYRFAFEAAYKDEKMGCCTGYCSSCRSIVWLDRNRCSNETNRRDEVKHQI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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