当前解析结果
SmilChr03G003723| 统一新 Gene ID | SmilChr03G003723 |
|---|---|
| 名称 | SmilChr03G003723 |
| 描述 | pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 56248694 - 56250895 / - |
| NCBI Gene ID | LOC131014587 |
|---|---|
| GeneID | 131014587 |
| locus_tag | - |
| NCBI Name | LOC131014587 |
| 原始查询 | SmilChr03G003723 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial-like |
| 产物 | pentatricopeptide repeat-containing protein At1g59720%2C chloroplastic/mitochondrial-like |
| Arabidopsis | AT1G59720 (CRR28)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842263] identity=55.9; qcov=1; evalue=0; confidence=high |
| Rice | Os07g0191500- identity=52.2; qcov=0.836; evalue=0; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF14432 (DYW_deaminase); PF20430 (Eplus_motif); PF20431 (E_motif) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014587 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057798581.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057798581.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057798581.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057798581.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057798581.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:56248898 |
G |
GT |
1bp_insertion | frameshift_variant | 2 | C77,D6 |
Chr3:56248898 |
G |
GT |
1bp_insertion | CDS_variant | 2 | C77,D6 |
Chr3:56248904 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr3:56248964 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,B137 |
Chr3:56248973 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:56249007 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B63,B83 |
Chr3:56249056 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:56249300 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B115,B20,B68 |
Chr3:56249311 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:56249640 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr3:56249717 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B101,B17,D8 |
Chr3:56249726 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B59,B75,C34 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798581.1PF01535
PPR 167-192 aa
PF01535
PPR 195-220 aa
PF01535
PPR 270-296 aa
PF01535
PPR 299-326 aa
PF01535
PPR 372-396 aa
PF20431
E_motif 422-478 aa
PF20430
Eplus_motif 483-504 aa
PF14432
DYW_deaminase 514-608 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798581.1 |
Pfam | PF01535 |
PPR | Repeat | 167 | 192 | 1.7e-32 | 110.1 | PPR repeat |
XP_057798581.1 |
Pfam | PF01535 |
PPR | Repeat | 195 | 220 | 1.7e-32 | 110.1 | PPR repeat |
XP_057798581.1 |
Pfam | PF01535 |
PPR | Repeat | 270 | 296 | 1.7e-32 | 110.1 | PPR repeat |
XP_057798581.1 |
Pfam | PF01535 |
PPR | Repeat | 299 | 326 | 1.7e-32 | 110.1 | PPR repeat |
XP_057798581.1 |
Pfam | PF01535 |
PPR | Repeat | 372 | 396 | 1.7e-32 | 110.1 | PPR repeat |
XP_057798581.1 |
Pfam | PF20431 |
E_motif | Repeat | 422 | 478 | 2.8e-12 | 47.4 | E motif |
XP_057798581.1 |
Pfam | PF20430 |
Eplus_motif | Motif | 483 | 504 | 2.9e-08 | 34.0 | E+ motif |
XP_057798581.1 |
Pfam | PF14432 |
DYW_deaminase | Domain | 514 | 608 | 2e-30 | 105.1 | DYW family of nucleic acid deaminases |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。