当前解析结果
SmilChr03G003729| 统一新 Gene ID | SmilChr03G003729 |
|---|---|
| 名称 | SmilChr03G003729 |
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 56327259 - 56331090 / + |
| NCBI Gene ID | LOC131014591 |
|---|---|
| GeneID | 131014591 |
| locus_tag | - |
| NCBI Name | LOC131014591 |
| 原始查询 | SmilChr03G003729 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 |
| 产物 | G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 |
| Arabidopsis | AT5G24080 (AT5G24080)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832473] identity=65.6; qcov=1.05; evalue=0; confidence=high |
| Rice | Os07g0553633- identity=37.9; qcov=0.966; evalue=3.7e-136; confidence=medium |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0048544 (recognition of pollen) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00954 (S_locus_glycop); PF01453 (B_lectin); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014591 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057798585.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057798585.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057798585.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057798585.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057798585.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:56327507 |
G |
GAA |
2bp_insertion | frameshift_variant | 2 | B135,C62 |
Chr3:56327507 |
G |
GAA |
2bp_insertion | CDS_variant | 2 | B135,C62 |
Chr3:56328421 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr3:56328521 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:56328554 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B123,B14,B23,C27,C8 |
Chr3:56328572 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,B139,C28 |
Chr3:56328878 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr3:56328958 |
T |
TCA |
2bp_insertion | frameshift_variant | 1 | B88 |
Chr3:56328958 |
T |
TCA |
2bp_insertion | CDS_variant | 1 | B88 |
Chr3:56328995 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,B139,C28 |
Chr3:56329004 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr3:56329019 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C60 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798585.1PF01453
B_lectin 73-160 aa
PF00954
S_locus_glycop 264-332 aa
PF07714
PK_Tyr_Ser-Thr 513-785 aa
PF00069
Pkinase 514-718 aa
XP_057798586.1PF01453
B_lectin 82-155 aa
PF00954
S_locus_glycop 259-327 aa
PF07714
PK_Tyr_Ser-Thr 508-780 aa
PF00069
Pkinase 509-713 aa
XP_057798587.1PF01453
B_lectin 27-101 aa
PF00954
S_locus_glycop 205-273 aa
PF07714
PK_Tyr_Ser-Thr 454-726 aa
PF00069
Pkinase 455-659 aa
XP_057798588.1PF00954
S_locus_glycop 143-211 aa
PF07714
PK_Tyr_Ser-Thr 392-664 aa
PF00069
Pkinase 393-597 aa
XP_057798589.1PF00954
S_locus_glycop 143-211 aa
PF07714
PK_Tyr_Ser-Thr 392-664 aa
PF00069
Pkinase 393-597 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798585.1 |
Pfam | PF01453 |
B_lectin | Repeat | 73 | 160 | 1.1e-18 | 68.3 | D-mannose binding lectin |
XP_057798585.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 264 | 332 | 1.6e-08 | 35.8 | S-locus glycoprotein domain |
XP_057798585.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 513 | 785 | 1.3e-38 | 133.5 | Protein tyrosine and serine/threonine kinase |
XP_057798585.1 |
Pfam | PF00069 |
Pkinase | Domain | 514 | 718 | 4.9e-43 | 148.1 | Protein kinase domain |
XP_057798586.1 |
Pfam | PF01453 |
B_lectin | Repeat | 82 | 155 | 3.1e-16 | 60.5 | D-mannose binding lectin |
XP_057798586.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 259 | 327 | 1.6e-08 | 35.8 | S-locus glycoprotein domain |
XP_057798586.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 508 | 780 | 1.3e-38 | 133.5 | Protein tyrosine and serine/threonine kinase |
XP_057798586.1 |
Pfam | PF00069 |
Pkinase | Domain | 509 | 713 | 4.8e-43 | 148.2 | Protein kinase domain |
XP_057798587.1 |
Pfam | PF01453 |
B_lectin | Repeat | 27 | 101 | 2.3e-16 | 60.9 | D-mannose binding lectin |
XP_057798587.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 205 | 273 | 1.5e-08 | 35.9 | S-locus glycoprotein domain |
XP_057798587.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 454 | 726 | 1.1e-38 | 133.7 | Protein tyrosine and serine/threonine kinase |
XP_057798587.1 |
Pfam | PF00069 |
Pkinase | Domain | 455 | 659 | 4.7e-43 | 148.2 | Protein kinase domain |
XP_057798588.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 143 | 211 | 1.3e-08 | 36.1 | S-locus glycoprotein domain |
XP_057798588.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 392 | 664 | 9.6e-39 | 133.9 | Protein tyrosine and serine/threonine kinase |
XP_057798588.1 |
Pfam | PF00069 |
Pkinase | Domain | 393 | 597 | 4e-43 | 148.4 | Protein kinase domain |
XP_057798589.1 |
Pfam | PF00954 |
S_locus_glycop | Domain | 143 | 211 | 1.3e-08 | 36.1 | S-locus glycoprotein domain |
XP_057798589.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 392 | 664 | 9.6e-39 | 133.9 | Protein tyrosine and serine/threonine kinase |
XP_057798589.1 |
Pfam | PF00069 |
Pkinase | Domain | 393 | 597 | 4e-43 | 148.4 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。