当前解析结果
SmilChr03G003730| 统一新 Gene ID | SmilChr03G003730 |
|---|---|
| 名称 | SmilChr03G003730 |
| 描述 | uncharacterized SmilChr03G003730 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 56331741 - 56336354 / + |
| NCBI Gene ID | LOC131014592 |
|---|---|
| GeneID | 131014592 |
| locus_tag | - |
| NCBI Name | LOC131014592 |
| 原始查询 | SmilChr03G003730 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | OsWD40-117; symbol=OsWD40-117; hit=Os05g0299300; species=rice; confidence=weak |
| 产物 | OsWD40-117; symbol=OsWD40-117; hit=Os05g0299300; species=rice; confidence=weak |
| Arabidopsis | AT3G49660 (WDR5a)Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824128] identity=22.6; qcov=0.541; evalue=5.64e-14; confidence=weak |
| Rice | Os05g0299300 (OsWD40-117)- identity=57.2; qcov=0.219; evalue=9.17e-48; confidence=weak |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00400 (WD40); PF12894 (ANAPC4_WD40); PF23138 (CTLH_Armc9) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014592 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057798590.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057798590.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057798590.1 |
| 4 | Trans-golgi network | Trans-golgi network | 0.40000 | XP_057798590.1 |
| 5 | Cytoplasmic vesicle | 细胞质囊泡 | 0.20000 | XP_057798590.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:56331958 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr3:56332222 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr3:56332276 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B10,B139 |
Chr3:56332485 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B75,C54 |
Chr3:56333847 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr3:56334044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B118,B127,C7 |
Chr3:56335318 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B118,B127,C7 |
Chr3:56335460 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,B139,B85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798590.1PF23138
CTLH_Armc9 54-167 aa
PF00400
WD40 279-312 aa
PF12894
ANAPC4_WD40 425-480 aa
PF00400
WD40 432-458 aa
PF00400
WD40 463-500 aa
PF00400
WD40 562-591 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798590.1 |
Pfam | PF23138 |
CTLH_Armc9 | Domain | 54 | 167 | 2.1e-15 | 58.0 | Armc9, CTLH-like domain |
XP_057798590.1 |
Pfam | PF00400 |
WD40 | Repeat | 279 | 312 | 2.2e-25 | 88.7 | WD domain, G-beta repeat |
XP_057798590.1 |
Pfam | PF12894 |
ANAPC4_WD40 | Repeat | 425 | 480 | 2.9e-13 | 50.6 | Anaphase-promoting complex subunit 4 WD40 domain |
XP_057798590.1 |
Pfam | PF00400 |
WD40 | Repeat | 432 | 458 | 2.2e-25 | 88.7 | WD domain, G-beta repeat |
XP_057798590.1 |
Pfam | PF00400 |
WD40 | Repeat | 463 | 500 | 2.2e-25 | 88.7 | WD domain, G-beta repeat |
XP_057798590.1 |
Pfam | PF00400 |
WD40 | Repeat | 562 | 591 | 2.2e-25 | 88.7 | WD domain, G-beta repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。