当前解析结果
SmilChr03G003739| 统一新 Gene ID | SmilChr03G003739 |
|---|---|
| 名称 | SmilChr03G003739 |
| 描述 | hydroxyproline O-galactosyltransferase HPGT1 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 56454407 - 56458435 / + |
| NCBI Gene ID | LOC131014601 |
|---|---|
| GeneID | 131014601 |
| locus_tag | - |
| NCBI Name | LOC131014601 |
| 原始查询 | SmilChr03G003739 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hydroxyproline O-galactosyltransferase HPGT1 |
| 产物 | hydroxyproline O-galactosyltransferase HPGT1 |
| Arabidopsis | AT5G53340 (AT5G53340)Galactosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835415] identity=66; qcov=0.941; evalue=1.05e-165; confidence=high |
| Rice | Os08g0386700- identity=65.3; qcov=0.979; evalue=4.19e-171; confidence=high |
| GO | GO:0000139 (Golgi membrane); GO:0006486 (GO:0006486); GO:0016758 (hexosyltransferase activity) |
| KEGG | - |
| Pfam | PF01762 (Galactosyl_T); PF13334 (DUF4094) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014601 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057798603.1 |
| 2 | Golgi stack | 高尔基堆 | 0.20000 | XP_057798605.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057798603.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057798603.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057798603.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:56455331 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr3:56456149 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
Chr3:56456184 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A6,B104,C45 |
Chr3:56456326 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr3:56457388 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B23,B7,C1 |
Chr3:56457561 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr3:56457589 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr3:56457590 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A20,B10,B66,C30,D1 |
Chr3:56457854 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr3:56457988 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr3:56457989 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B127,C7 |
Chr3:56458090 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798603.1PF13334
DUF4094 17-94 aa
PF01762
Galactosyl_T 128-323 aa
XP_057798604.1PF13334
DUF4094 17-94 aa
PF01762
Galactosyl_T 128-324 aa
XP_057798605.1PF13334
DUF4094 17-94 aa
PF01762
Galactosyl_T 128-323 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798603.1 |
Pfam | PF13334 |
DUF4094 | Family | 17 | 94 | 2.3e-07 | 31.9 | Domain of unknown function (DUF4094) |
XP_057798603.1 |
Pfam | PF01762 |
Galactosyl_T | Family | 128 | 323 | 3.9e-37 | 128.7 | Galactosyltransferase |
XP_057798604.1 |
Pfam | PF13334 |
DUF4094 | Family | 17 | 94 | 1.6e-07 | 32.4 | Domain of unknown function (DUF4094) |
XP_057798604.1 |
Pfam | PF01762 |
Galactosyl_T | Family | 128 | 324 | 4.2e-36 | 125.3 | Galactosyltransferase |
XP_057798605.1 |
Pfam | PF13334 |
DUF4094 | Family | 17 | 94 | 1.6e-07 | 32.4 | Domain of unknown function (DUF4094) |
XP_057798605.1 |
Pfam | PF01762 |
Galactosyl_T | Family | 128 | 323 | 3.4e-37 | 128.9 | Galactosyltransferase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。