当前解析结果
SmilChr03G003741| 统一新 Gene ID | SmilChr03G003741 |
|---|---|
| 名称 | SmilChr03G003741 |
| 描述 | uncharacterized SmilChr03G003741 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 56460675 - 56464610 / - |
| NCBI Gene ID | LOC131014602 |
|---|---|
| GeneID | 131014602 |
| locus_tag | - |
| NCBI Name | LOC131014602 |
| 原始查询 | SmilChr03G003741 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hAT transposon superfamily [Source:NCBI gene (formerly Entrezgene);Acc:844313]; symbol=AT1G79740; hit=AT1G79740; species=arabidopsis; confidence=high |
| 产物 | hAT transposon superfamily [Source:NCBI gene (formerly Entrezgene);Acc:844313]; symbol=AT1G79740; hit=AT1G79740; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G79740 (AT1G79740)hAT transposon superfamily [Source:NCBI gene (formerly Entrezgene);Acc:844313] identity=66.4; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0222700- identity=53.8; qcov=1.03; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity) |
| KEGG | - |
| Pfam | PF02892 (zf-BED); PF04937 (DUF659); PF05699 (Dimer_Tnp_hAT); PF26664 (zf-BED_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014602 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057798606.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057798606.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057798606.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057798606.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057798606.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:56460934 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr3:56461054 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B75,C54 |
Chr3:56461150 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B117,C27 |
Chr3:56461745 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr3:56462318 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B23 |
Chr3:56462332 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr3:56462642 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B135,C72 |
Chr3:56463046 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr3:56463113 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798606.1PF02892
zf-BED 9-42 aa
PF26664
zf-BED_2 19-62 aa
PF04937
DUF659 170-321 aa
PF05699
Dimer_Tnp_hAT 542-610 aa
XP_057798607.1PF02892
zf-BED 9-42 aa
PF26664
zf-BED_2 19-62 aa
PF04937
DUF659 170-321 aa
PF05699
Dimer_Tnp_hAT 542-610 aa
XP_057798608.1PF02892
zf-BED 9-42 aa
PF26664
zf-BED_2 19-62 aa
PF04937
DUF659 170-321 aa
PF05699
Dimer_Tnp_hAT 542-610 aa
XP_057798609.1PF02892
zf-BED 9-42 aa
PF26664
zf-BED_2 19-62 aa
PF04937
DUF659 170-321 aa
PF05699
Dimer_Tnp_hAT 542-610 aa
XP_057798610.1PF02892
zf-BED 9-42 aa
PF26664
zf-BED_2 19-62 aa
PF04937
DUF659 170-321 aa
PF05699
Dimer_Tnp_hAT 542-610 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798606.1 |
Pfam | PF02892 |
zf-BED | Domain | 9 | 42 | 3e-07 | 31.1 | BED zinc finger |
XP_057798606.1 |
Pfam | PF26664 |
zf-BED_2 | Domain | 19 | 62 | 4.7e-07 | 30.2 | BED-like zinc finger |
XP_057798606.1 |
Pfam | PF04937 |
DUF659 | Domain | 170 | 321 | 6.2e-56 | 188.9 | Domain of unknown function (DUF659) |
XP_057798606.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 542 | 610 | 4.1e-16 | 59.3 | hAT family C-terminal dimerisation region |
XP_057798607.1 |
Pfam | PF02892 |
zf-BED | Domain | 9 | 42 | 3e-07 | 31.1 | BED zinc finger |
XP_057798607.1 |
Pfam | PF26664 |
zf-BED_2 | Domain | 19 | 62 | 4.7e-07 | 30.2 | BED-like zinc finger |
XP_057798607.1 |
Pfam | PF04937 |
DUF659 | Domain | 170 | 321 | 6.2e-56 | 188.9 | Domain of unknown function (DUF659) |
XP_057798607.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 542 | 610 | 4.1e-16 | 59.3 | hAT family C-terminal dimerisation region |
XP_057798608.1 |
Pfam | PF02892 |
zf-BED | Domain | 9 | 42 | 3e-07 | 31.1 | BED zinc finger |
XP_057798608.1 |
Pfam | PF26664 |
zf-BED_2 | Domain | 19 | 62 | 4.7e-07 | 30.2 | BED-like zinc finger |
XP_057798608.1 |
Pfam | PF04937 |
DUF659 | Domain | 170 | 321 | 6.2e-56 | 188.9 | Domain of unknown function (DUF659) |
XP_057798608.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 542 | 610 | 4.1e-16 | 59.3 | hAT family C-terminal dimerisation region |
XP_057798609.1 |
Pfam | PF02892 |
zf-BED | Domain | 9 | 42 | 3e-07 | 31.1 | BED zinc finger |
XP_057798609.1 |
Pfam | PF26664 |
zf-BED_2 | Domain | 19 | 62 | 4.7e-07 | 30.2 | BED-like zinc finger |
XP_057798609.1 |
Pfam | PF04937 |
DUF659 | Domain | 170 | 321 | 6.2e-56 | 188.9 | Domain of unknown function (DUF659) |
XP_057798609.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 542 | 610 | 4.1e-16 | 59.3 | hAT family C-terminal dimerisation region |
XP_057798610.1 |
Pfam | PF02892 |
zf-BED | Domain | 9 | 42 | 3e-07 | 31.1 | BED zinc finger |
XP_057798610.1 |
Pfam | PF26664 |
zf-BED_2 | Domain | 19 | 62 | 4.7e-07 | 30.2 | BED-like zinc finger |
XP_057798610.1 |
Pfam | PF04937 |
DUF659 | Domain | 170 | 321 | 6.2e-56 | 188.9 | Domain of unknown function (DUF659) |
XP_057798610.1 |
Pfam | PF05699 |
Dimer_Tnp_hAT | Domain | 542 | 610 | 4.1e-16 | 59.3 | hAT family C-terminal dimerisation region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。