Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003758`

染色体: Chr03 坐标: 56686700-56689971 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003758`
名称	SmilChr03G003758
描述	uncharacterized SmilChr03G003758
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	56686700 - 56689971 / `-`

ID 对照

NCBI Gene ID	`LOC131014618`
GeneID	`131014618`
locus_tag	`-`
NCBI Name	`LOC131014618`
原始查询	`SmilChr03G003758`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:835403]; symbol=AT5G53220; hit=AT5G53220; species=arabidopsis; confidence=weak
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:835403]; symbol=AT5G53220; hit=AT5G53220; species=arabidopsis; confidence=weak
Arabidopsis	`AT5G53220` (AT5G53220) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:835403] identity=48.3; qcov=0.285; evalue=3.47e-44; confidence=weak
Rice	`Os01g0221300` - identity=43.4; qcov=0.284; evalue=7.41e-39; confidence=weak
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131014618

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057798622.1`
2	Chromosome	染色体	0.20000	`XP_057798622.1`
3	Centromere	着丝粒	0.00000	`XP_057798622.1`
4	Chromatin	染色质	0.00000	`XP_057798622.1`
5	Telomere	端粒	0.00000	`XP_057798622.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:56687016`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr3:56687769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B5,C72
`Chr3:56687854`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr3:56687856`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B127,C7
`Chr3:56688089`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B112,B16,B46,C59,D8
`Chr3:56688664`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr3:56688665`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr3:56689404`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A16,B123,B14,B50
`Chr3:56689433`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B75,C54
`Chr3:56689465`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr3:56689469`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B4
`Chr3:56689469`	`AT`	`A`	1bp_deletion	CDS_variant	1	B4

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942639.1
GATCGCTTAAAAAACACAATTTTAATAAGATAATTACTCCTATAATTCTTCTTTAGTTTGGGGGAGATAATCTGCTACTTTTATGTAAAGAAACTGTCCTCTACGATCAATCACTATTCGCAGCTCTTCCTATCAGAAAATCAGAACAAACGGAACGGCGTCTGCAGCAGTTTCGCCTCACCCTTGCATCTTGTTCATTCTTTTGTTTTGTCCTGTATCTTGAAATTAGGTTTTAGGTTTCAGATGCGGGTATGGAAGAC...

XM_057942640.1
CGCTTAAAAAACACAATTTTAATAAGATAATTACTCCTATAATTCTTCTTTAGTTTGGGGGAGATAATCTGCTACTTTTATGTAAAGAAACTGTCCTCTACGATCAATCACTATTCGCAGCTCTTCCTATCAGAAAATCAGAACAAACGGAACGGCGTCTGCAGCAGTTTCGCCTCACCCTTGCATCTTGTTCATTCTTGTTTCAGATGCGGGTATGGAAGACGATAAGGGGATAAAATTGGAGGAGCAGGAAAATGGGA...

CDS

2 records

下载 CDS FASTA

LOC131014618
ATGGAAGACGATAAGGGGATAAAATTGGAGGAGCAGGAAAATGGGAACTGTTTTGGTAGTGGGGAGTGCTTTGGATGTTTTGATTTGCAAGATAAAATGAAAAAGGCCAATGACAAATGTGCGAATCTGGAAATTGATATTGGAAAGAAAAACTCTATAATTGAACGTCTGGAGTGTAAGGTTGGCTTTATGGAACTGGAAAATATCGAATTCCTGGATGAGGTAAGAAAGTTGAAACAGAGGAACGAAGAGCTTGAAAA...

Protein

2 records

下载 Protein FASTA

XP_057798622.1
MEDDKGIKLEEQENGNCFGSGECFGCFDLQDKMKKANDKCANLEIDIGKKNSIIERLECKVGFMELENIEFLDEVRKLKQRNEELEKSIRDSEEEQEKFTHLMIENEVLLCEKRKAESDLERWKLKCKEMEAQVMELEKKLATGTTKAVRDSQDMCSGKINHRGGSLSGFNVEGGQPSALRAATENEANNGRSPASSPSNHYADTDGLKGSQKCLIKSRVRKCLDFAAEISPLQKSSPSSPGSRPPLEPIYVGDSDDDLD...

XP_057798623.1
MEDDKGIKLEEQENGNCFGSGECFGCFDLQDKMKKANDKCANLEIDIGKKNSIIERLECKVGFMELENIEFLDEVRKLKQRNEELEKSIRDSEEEQEKFTHLMIENEVLLCEKRKAESDLERWKLKCKEMEAQVMELEKKLATGTTKAVRDSQDMCSGKINHRGGSLSGFNVEGGQPSALRAATENEANNGRSPASSPSNHYADTDGLKGSQKCLIKSRVRKCLDFAAEISPLQKSSPSSPGSRPPLEPIYVGDSDDDLD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器