Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003771`

染色体: Chr03 坐标: 56851455-56857112 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003771`
名称	SmilChr03G003771
描述	probable trehalose-phosphate phosphatase 7
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	56851455 - 56857112 / `+`

ID 对照

NCBI Gene ID	`LOC131014629`
GeneID	`131014629`
locus_tag	`-`
NCBI Name	`LOC131014629`
原始查询	`SmilChr03G003771`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable trehalose-phosphate phosphatase 7
产物	probable trehalose-phosphate phosphatase 7
Arabidopsis	`AT1G35910` (TPPD) Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840493] identity=56.3; qcov=0.886; evalue=5e-113; confidence=high
Rice	`Os09g0369400` (OsTPP7) - identity=55.9; qcov=0.871; evalue=4.66e-117; confidence=high
GO	GO:0004805 (trehalose-phosphatase activity); GO:0005992 (trehalose biosynthetic process)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF02358 (Trehalose_PPase)
InterPro	-
eggNOG	-
NR	GeneID:131014629

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057798639.1`
2	Cytoplasm	细胞质	1.00000	`XP_057798640.1`
3	Nucleus	细胞核	0.00000	`XP_057798639.1`
4	Chromosome	染色体	0.00000	`XP_057798639.1`
5	Centromere	着丝粒	0.00000	`XP_057798639.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:56855031`	`G`	`A`	EMS_canonical_SNV	stop_gained	10	A11,A18,A24,B80,B93,C19,C3,C61,C78,C81
`Chr3:56855643`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B10,B140,C72
`Chr3:56856209`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B102
`Chr3:56856209`	`CA`	`C`	1bp_deletion	CDS_variant	1	B102
`Chr3:56856811`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr3:56856838`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B42,B43,C83

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798639.1

343 aa

172

343

Trehalose_PPase

PF02358 Trehalose_PPase 79-321 aa

XP_057798640.1

333 aa

166

333

Trehalose_PPase

PF02358 Trehalose_PPase 69-311 aa

XP_057798641.1

333 aa

166

333

Trehalose_PPase

PF02358 Trehalose_PPase 69-311 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798639.1`	Pfam	`PF02358`	Trehalose_PPase	Family	79	321	1.3e-60	205.1	Trehalose-phosphatase
`XP_057798640.1`	Pfam	`PF02358`	Trehalose_PPase	Family	69	311	1.2e-60	205.3	Trehalose-phosphatase
`XP_057798641.1`	Pfam	`PF02358`	Trehalose_PPase	Family	69	311	1.2e-60	205.3	Trehalose-phosphatase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057942657.1
ACTCCTTCGTCTAAACCCCTTTCTACGTCCATAAATAGCCGCAACATTTCCACCTCCTCTCCTCCTTTCCTCTCTCTCGCTCTCTCTCTCTCTCTGGCTCAAGAAACGTCGATAGAATTATGGTGAAGGAAAATATTCGGAGGCTTTACAACAGGGCTGTAGGCCTGCTATCCGAGCCCAAATTAAATGGAGCTGAGCCCAGTAGTGTGGAGCCCAATAAGCCCGACGCAATATATACTTCTTGGCTGAAGGAGCATCCT...

XM_057942658.1
AATCTACAATTTATATAATTTAGTATTTTTATTTTATCACAATGATTCTTATAGTTCTAACCCTTTCAATATAATATGAAACCAAGCAAGATATTTTAAATTGTAGAAATAATTAATGACTTTAAAATATCACAAATTTTTATCAATCTTAATAAATAATAATTCAATCTATATATTTAAATTAATATCTTCCATATTAAATGCCTAGAAGATTTATTAACTCTATACGCCTTCAATTCCAGCCCATTAATTGCGCCCAT...

CDS

3 records

下载 CDS FASTA

LOC131014629
ATGGGTGATTGGCTATTTATTTATAGAATTATGGTGAAGGAAAATATTCGGAGGCTTTACAACAGGGCTGTAGGCCTGCTATCCGAGCCCAAATTAAATGGAGCTGAGCCCAGTAGTGTGGAGCCCAATAAGCCCGACGCAATATATACTTCTTGGCTGAAGGAGCATCCTTCAGCACTAACTTCGTTTCAAGCGATGACGAGCGCGATGGCGCAAGGGAAGCAAATAGTCGTGTTTTTGGATTATGACGGCACGCTTTC...

LOC131014629
ATGGTGAAGGAAAATATTCGGAGGCTTTACAACAGGGCTGTAGGCCTGCTATCCGAGCCCAAATTAAATGGAGCTGAGCCCAGTAGTGTGGAGCCCAATAAGCCCGACGCAATATATACTTCTTGGCTGAAGGAGCATCCTTCAGCACTAACTTCGTTTCAAGCGATGACGAGCGCGATGGCGCAAGGGAAGCAAATAGTCGTGTTTTTGGATTATGACGGCACGCTTTCTCCCATCGTTAGCGATCCCGACCGCGCCTT...

Protein

3 records

下载 Protein FASTA

XP_057798639.1
MGDWLFIYRIMVKENIRRLYNRAVGLLSEPKLNGAEPSSVEPNKPDAIYTSWLKEHPSALTSFQAMTSAMAQGKQIVVFLDYDGTLSPIVSDPDRAFMSDAMRCALREVAKHFPTAIISGRSRDKVYGFVKLDEVYYAGSHGMDIMGPPSHVNSYDGKYQTNTMDKKGNEITIFQPAKEYLPTIKKMLEEIKQRSCDIPGVFVEDNRFCISVHYRHVLSEDCGDLEEIIHNLLSEYPNFHLTRGKKVLEIRPSIKWNKGD...

XP_057798640.1
MVKENIRRLYNRAVGLLSEPKLNGAEPSSVEPNKPDAIYTSWLKEHPSALTSFQAMTSAMAQGKQIVVFLDYDGTLSPIVSDPDRAFMSDAMRCALREVAKHFPTAIISGRSRDKVYGFVKLDEVYYAGSHGMDIMGPPSHVNSYDGKYQTNTMDKKGNEITIFQPAKEYLPTIKKMLEEIKQRSCDIPGVFVEDNRFCISVHYRHVLSEDCGDLEEIIHNLLSEYPNFHLTRGKKVLEIRPSIKWNKGDALVYLLETLG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器