Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003773`

染色体: Chr03 坐标: 56886100-56891814 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003773`
名称	SmilChr03G003773
描述	spermine synthase
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	56886100 - 56891814 / `-`

ID 对照

NCBI Gene ID	`LOC131014631`
GeneID	`131014631`
locus_tag	`-`
NCBI Name	`LOC131014631`
原始查询	`SmilChr03G003773`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	spermine synthase
产物	spermine synthase
Arabidopsis	`AT5G53120` (SPDS3) spermidine synthase 3 [Source:NCBI gene (formerly Entrezgene);Acc:835392] identity=76.3; qcov=1; evalue=0; confidence=high
Rice	`Os06g0528600` (OsSPDS2) - identity=73.5; qcov=0.989; evalue=0; confidence=high
GO	GO:0004766 (spermidine synthase activity); GO:0005829 (cytosol); GO:0008295 (spermidine biosynthetic process)
KEGG	smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00330 (Arginine and proline metabolism - Salvia miltiorrhiza (redroot sage)); smil00480 (Glutathione metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01564 (Spermine_synth); PF17284 (Spermine_synt_N)
InterPro	-
eggNOG	-
NR	GeneID:131014631

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057798643.1`
2	Cytosol	细胞质基质	1.00000	`XP_057798643.1`
3	Nucleus	细胞核	0.60000	`XP_057798643.1`
4	Chromosome	染色体	0.00000	`XP_057798643.1`
5	Centromere	着丝粒	0.00000	`XP_057798643.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:56888585`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr3:56888657`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C79,D10
`Chr3:56889571`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C79,D10
`Chr3:56889572`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798643.1

359 aa

180

359

Spermine_synt_N

Spermine_synth

PF17284 Spermine_synt_N 76-123 aa PF01564 Spermine_synth 126-311 aa

XP_057798644.1

359 aa

180

359

Spermine_synt_N

Spermine_synth

PF17284 Spermine_synt_N 76-123 aa PF01564 Spermine_synth 126-311 aa

XP_057798645.1

359 aa

180

359

Spermine_synt_N

Spermine_synth

PF17284 Spermine_synt_N 76-123 aa PF01564 Spermine_synth 126-311 aa

XP_057798646.1

359 aa

180

359

Spermine_synt_N

Spermine_synth

PF17284 Spermine_synt_N 76-123 aa PF01564 Spermine_synth 126-311 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798643.1`	Pfam	`PF17284`	Spermine_synt_N	Domain	76	123	9.8e-19	67.7	Spermidine synthase tetramerisation domain
`XP_057798643.1`	Pfam	`PF01564`	Spermine_synth	Domain	126	311	6.3e-71	238.5	Spermine/spermidine synthase domain
`XP_057798644.1`	Pfam	`PF17284`	Spermine_synt_N	Domain	76	123	9.8e-19	67.7	Spermidine synthase tetramerisation domain
`XP_057798644.1`	Pfam	`PF01564`	Spermine_synth	Domain	126	311	6.3e-71	238.5	Spermine/spermidine synthase domain
`XP_057798645.1`	Pfam	`PF17284`	Spermine_synt_N	Domain	76	123	9.8e-19	67.7	Spermidine synthase tetramerisation domain
`XP_057798645.1`	Pfam	`PF01564`	Spermine_synth	Domain	126	311	6.3e-71	238.5	Spermine/spermidine synthase domain
`XP_057798646.1`	Pfam	`PF17284`	Spermine_synt_N	Domain	76	123	9.8e-19	67.7	Spermidine synthase tetramerisation domain
`XP_057798646.1`	Pfam	`PF01564`	Spermine_synth	Domain	126	311	6.3e-71	238.5	Spermine/spermidine synthase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057942663.1
GAGTTTGTCAGTATGTCTATATTCATATTTATTTAATTTTTTTAAGTTATGCATTTTTATATCATGTACATTTTTCTTTTTATCAATATATCATGTATTTTTAAAAGTGTAGGAATTCCTAATACTACAACTCCATAAAGTCGGTGGTAAAAGCGACGACTGAAGCTCTAGAAGAAAAACATGGAAGATTTCAGTCGCAATTTCTGCCATCAATAGTTTCTTCTACGCTTCAAGAGTTTATTCACCTGTTTTTTGCTGCC...

XM_057942662.1
GAGTTTGTCAGTATGTCTATATTCATATTTATTTAATTTTTTTAAGTTATGCATTTTTATATCATGTACATTTTTCTTTTTATCAATATATCATGTATTTTTAAAAGTGTAGGAATTCCTAATACTACAACTCCATAAAGTCGGTGGTAAAAGGTTTGTGAAGCTTTTGTATCTCCATCGAATTCCCGTCACGTGCGACGACTGAAGCTCTAGAAGAAAAACATGGAAGATTTCAGTCGCAATTTCTGCCATCAATAGTT...

CDS

4 records

下载 CDS FASTA

LOC131014631
ATGGAAGGCGGCGCAGAAAGAGGTTCGGAATGCCAGAGGGCTACAGATGGGAGGGAGAGTAGTGACAATGGTTCTAGCAAGGCAATCCGTATCCCCTCTTGTTGCTTGAAAGCAAGGGCATCTGCGCCCGAGCTAGATGCCAAGTGCCACTCAACGGTTGTTTCTGGATGGTTCTCCGAAAGGCCATCCTCTGATGAATCTTTGAATGAAGTCTATTTTAACAATCCAATGTGGCCAGGAGAGTCGCATTCCCTGAAAGT...

Protein

4 records

下载 Protein FASTA

XP_057798643.1
MEGGAERGSECQRATDGRESSDNGSSKAIRIPSCCLKARASAPELDAKCHSTVVSGWFSERPSSDESLNEVYFNNPMWPGESHSLKVEKILFKDKSKYQEVLVFQSSAYGRVLVLDGIVQLTEKDECVYQEMITHLPLCSIESPKNVLVVGGGDGGVLREIARHSSVKLIDICEIDQMVIDVSKNFFPELAIGFEDPRVHLHVGDAIEFLKHTPEGKYDAIIVDSSDPVGPAQELVERPFFETIARALRPGGVLCNMAES...

XP_057798644.1
MEGGAERGSECQRATDGRESSDNGSSKAIRIPSCCLKARASAPELDAKCHSTVVSGWFSERPSSDESLNEVYFNNPMWPGESHSLKVEKILFKDKSKYQEVLVFQSSAYGRVLVLDGIVQLTEKDECVYQEMITHLPLCSIESPKNVLVVGGGDGGVLREIARHSSVKLIDICEIDQMVIDVSKNFFPELAIGFEDPRVHLHVGDAIEFLKHTPEGKYDAIIVDSSDPVGPAQELVERPFFETIARALRPGGVLCNMAES...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器