Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003774`

染色体: Chr03 坐标: 56910855-56913020 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003774`
名称	SmilChr03G003774
描述	protein phosphatase 2C 51-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	56910855 - 56913020 / `-`

ID 对照

NCBI Gene ID	`LOC131014632`
GeneID	`131014632`
locus_tag	`-`
NCBI Name	`LOC131014632`
原始查询	`SmilChr03G003774`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein phosphatase 2C 51-like
产物	protein phosphatase 2C 51-like
Arabidopsis	`AT2G29380` (HAI3) highly ABA-induced PP2C protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:817487] identity=50.7; qcov=0.799; evalue=2.91e-88; confidence=high
Rice	`Os01g0656200` (OsPP2C08) - identity=55.2; qcov=0.848; evalue=3.97e-100; confidence=high
GO	GO:0004722 (protein serine/threonine phosphatase activity); GO:0005634 (nucleus); GO:0005829 (cytosol); GO:0006470 (protein dephosphorylation); GO:0043169 (cation binding)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00481 (PP2C)
InterPro	-
eggNOG	-
NR	GeneID:131014632

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057798647.1`
2	Cytosol	细胞质基质	0.80000	`XP_057798647.1`
3	Cytoplasm	细胞质	0.60000	`XP_057798647.1`
4	Chromosome	染色体	0.00000	`XP_057798647.1`
5	Centromere	着丝粒	0.00000	`XP_057798647.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:56911047`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:56911378`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B108,C23
`Chr3:56912005`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr3:56912028`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B71
`Chr3:56912028`	`GC`	`G`	1bp_deletion	CDS_variant	1	B71
`Chr3:56912032`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B33
`Chr3:56912032`	`TG`	`T`	1bp_deletion	CDS_variant	1	B33
`Chr3:56912135`	`GTC`	`G`	2bp_deletion	frameshift_variant	1	C28
`Chr3:56912135`	`GTC`	`G`	2bp_deletion	CDS_variant	1	C28
`Chr3:56912143`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B76
`Chr3:56912143`	`CT`	`C`	1bp_deletion	CDS_variant	1	B76
`Chr3:56912452`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798647.1

363 aa

182

363

PP2C

PF00481 PP2C 109-355 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798647.1`	Pfam	`PF00481`	PP2C	Family	109	355	1.8e-65	221.9	Protein phosphatase 2C

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057942664.1
GAAAAGAAATTGTGTACGCAACTCTAACTGTGTATTAAATGTGGCAAGTAGAAATAGAAATACAAAATGGAAAAAAAGTGTTTTGTGCCACCTTAAACCTCTGAAAATTCTAACAACTGATCCCTGCATCCTCTCGCCACGTGTCCATATACCCAATATCGACAACCCACGTGGTTCGGCGCTTCATTATTTTACTTGACCGCCGCGTTTACAACCACGTGGCGCCGATCCAACTCCATTCTTATTTAAAGTTTAAACGG...

CDS

1 records

下载 CDS FASTA

LOC131014632
ATGATTTTCGACGAATTACGGCAAGGATCGATGGCACCGGAGGATACCTGCCGATCGGAGTTTAAAAGTGGGGAAGTGGTTTTGGATAGTGGCGACCCCAAGAAATCGAAGAATTTTGGCCGGAAAAAGATGGAACTCCGGCGGATCAAGTCGGTTTCCACCGGAAAATCCGGAGATCTAGTGGAGTTTTTGGATTGTAAGGTTTCTAGTAGGAAAAGGAGATCCGATGTTAAGAAAGAGATAAAATTGATGGAAGAAGC...

Protein

1 records

下载 Protein FASTA

XP_057798647.1
MIFDELRQGSMAPEDTCRSEFKSGEVVLDSGDPKKSKNFGRKKMELRRIKSVSTGKSGDLVEFLDCKVSSRKRRSDVKKEIKLMEEALLVESDVGLGGSRDAACPAHGAVSIIGRRREMEDAVAAELDFLKKGGKSYSFFGVYDGHGGFHVARACSEMMHKLLVEIVEEDVGEEIAWDRVMAVGFRKMDEEVNKSGALVASTGSTAVVAVVGEEEVVVANCGDSRAVLSRGGVAVQLSDDHKPDRADELERIEGCGGKVI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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