Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003775`

染色体: Chr03 坐标: 56917900-56920640 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003775`
名称	SmilChr03G003775
描述	pentatricopeptide repeat-containing protein At3g49170, chloroplastic
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	56917900 - 56920640 / `-`

ID 对照

NCBI Gene ID	`LOC131014633`
GeneID	`131014633`
locus_tag	`-`
NCBI Name	`LOC131014633`
原始查询	`SmilChr03G003775`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At3g49170, chloroplastic
产物	pentatricopeptide repeat-containing protein At3g49170%2C chloroplastic
Arabidopsis	`AT3G49170` (EMB2261) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824078] identity=57.1; qcov=1.01; evalue=0; confidence=high
Rice	`Os05g0212100` - identity=51.3; qcov=0.904; evalue=0; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20430 (Eplus_motif); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131014633

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057798648.1`
2	Chloroplast	叶绿体	0.40000	`XP_057798648.1`
3	Nucleus	细胞核	0.00000	`XP_057798648.1`
4	Chromosome	染色体	0.00000	`XP_057798648.1`
5	Centromere	着丝粒	0.00000	`XP_057798648.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:56918030`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr3:56918473`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A4,D11
`Chr3:56918503`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr3:56918581`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr3:56918680`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C7,C83
`Chr3:56918782`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B10
`Chr3:56918819`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:56918827`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr3:56918973`	`TTG`	`T`	2bp_deletion	frameshift_variant	1	D7
`Chr3:56918973`	`TTG`	`T`	2bp_deletion	CDS_variant	1	D7
`Chr3:56919485`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C81,D11
`Chr3:56919491`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798648.1

854 aa

427

854

PPR_3

PPR

PPR_2

PPR

PPR_3

PPR

PPR_2

PPR_3

PPR

PPR_3

PPR

E_motif

Eplus_motif

DYW_deaminase

PF13812 PPR_3 95-131 aa PF01535 PPR 108-131 aa PF01535 PPR 138-167 aa PF01535 PPR 223-239 aa PF13041 PPR_2 238-286 aa PF01535 PPR 241-271 aa PF13812 PPR_3 341-393 aa PF01535 PPR 346-375 aa PF01535 PPR 420-445 aa PF01535 PPR 448-475 aa PF01535 PPR 519-548 aa PF13041 PPR_2 546-594 aa PF13812 PPR_3 547-593 aa PF01535 PPR 549-579 aa PF13812 PPR_3 570-630 aa PF01535 PPR 584-612 aa PF01535 PPR 622-645 aa PF20431 E_motif 664-726 aa PF20430 Eplus_motif 731-756 aa PF14432 DYW_deaminase 762-854 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798648.1`	Pfam	`PF13812`	PPR_3	Repeat	95	131	3.7e-36	123.7	Pentatricopeptide repeat domain
`XP_057798648.1`	Pfam	`PF01535`	PPR	Repeat	108	131	9.8e-71	229.9	PPR repeat
`XP_057798648.1`	Pfam	`PF01535`	PPR	Repeat	138	167	9.8e-71	229.9	PPR repeat
`XP_057798648.1`	Pfam	`PF01535`	PPR	Repeat	223	239	9.8e-71	229.9	PPR repeat
`XP_057798648.1`	Pfam	`PF13041`	PPR_2	Repeat	238	286	7e-83	273.3	PPR repeat family
`XP_057798648.1`	Pfam	`PF01535`	PPR	Repeat	241	271	9.8e-71	229.9	PPR repeat
`XP_057798648.1`	Pfam	`PF13812`	PPR_3	Repeat	341	393	3.7e-36	123.7	Pentatricopeptide repeat domain
`XP_057798648.1`	Pfam	`PF01535`	PPR	Repeat	346	375	9.8e-71	229.9	PPR repeat
`XP_057798648.1`	Pfam	`PF01535`	PPR	Repeat	420	445	9.8e-71	229.9	PPR repeat
`XP_057798648.1`	Pfam	`PF01535`	PPR	Repeat	448	475	9.8e-71	229.9	PPR repeat
`XP_057798648.1`	Pfam	`PF01535`	PPR	Repeat	519	548	9.8e-71	229.9	PPR repeat
`XP_057798648.1`	Pfam	`PF13041`	PPR_2	Repeat	546	594	7e-83	273.3	PPR repeat family
`XP_057798648.1`	Pfam	`PF13812`	PPR_3	Repeat	547	593	3.7e-36	123.7	Pentatricopeptide repeat domain
`XP_057798648.1`	Pfam	`PF01535`	PPR	Repeat	549	579	9.8e-71	229.9	PPR repeat
`XP_057798648.1`	Pfam	`PF13812`	PPR_3	Repeat	570	630	3.7e-36	123.7	Pentatricopeptide repeat domain
`XP_057798648.1`	Pfam	`PF01535`	PPR	Repeat	584	612	9.8e-71	229.9	PPR repeat
`XP_057798648.1`	Pfam	`PF01535`	PPR	Repeat	622	645	9.8e-71	229.9	PPR repeat
`XP_057798648.1`	Pfam	`PF20431`	E_motif	Repeat	664	726	6e-21	75.2	E motif
`XP_057798648.1`	Pfam	`PF20430`	Eplus_motif	Motif	731	756	1.1e-06	29.0	E+ motif
`XP_057798648.1`	Pfam	`PF14432`	DYW_deaminase	Domain	762	854	5.1e-42	142.3	DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057942665.1
TTTGTATTAAAAAAAAACAGAATATAAAAAGTAGACAGATAAATCCAGTAAAGAGAGGCGTTAGTAAGATAGAATGATAAGGCTCTCTTTGCCATCCGCCGCCTCTCCTCCGCTCAAACCCAAAAACCACTCCCGCCATAAAACCTCCACCGCTAAACCTCCCGATATCATCAGCTTCGAATCACTCAAGAGCTGTCTGATACGCCATGCCGATGTGGGCCGCGTCGATGAAGCAATCTCCATCCTTGATCTCATGTCCC...

CDS

1 records

下载 CDS FASTA

LOC131014633
ATGATAAGGCTCTCTTTGCCATCCGCCGCCTCTCCTCCGCTCAAACCCAAAAACCACTCCCGCCATAAAACCTCCACCGCTAAACCTCCCGATATCATCAGCTTCGAATCACTCAAGAGCTGTCTGATACGCCATGCCGATGTGGGCCGCGTCGATGAAGCAATCTCCATCCTTGATCTCATGTCCCGCTCCAATCTCTGCCCGGATCTCACCACCTACTCCGTGCTCCTCAAGTCCTGTATCAGAACCCGAAACTTCCA...

Protein

1 records

下载 Protein FASTA

XP_057798648.1
MIRLSLPSAASPPLKPKNHSRHKTSTAKPPDIISFESLKSCLIRHADVGRVDEAISILDLMSRSNLCPDLTTYSVLLKSCIRTRNFQLGRAVHSKLAHSGLQLDAIVLNSLITLYSKCGDSRKAEEIFGSMGGARDLVSWSAMISGYAHSGLNFEAISLFFEMLEFGERPNQFCFSAAIRACSNREYARIGLVIFGFLMKTGYFESDVCVGCALIDLFAKGFGDLESAKKLFDEMPEKNSVSWTLMITRFMQMGSSMDAI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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