当前解析结果
SmilChr03G003777| 统一新 Gene ID | SmilChr03G003777 |
|---|---|
| 名称 | SmilChr03G003777 |
| 描述 | uncharacterized SmilChr03G003777 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 56922624 - 56925507 / + |
| NCBI Gene ID | LOC131019041 |
|---|---|
| GeneID | 131019041 |
| locus_tag | - |
| NCBI Name | LOC131019041 |
| 原始查询 | SmilChr03G003777 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0704400; species=rice; confidence=low |
| 产物 | hit=Os06g0704400; species=rice; confidence=low |
| Arabidopsis | AT1G06740 (MUG3)MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=26.1; qcov=0.664; evalue=5.34e-66; confidence=low |
| Rice | Os06g0704400- identity=32.9; qcov=0.746; evalue=6.2e-106; confidence=low |
| GO | GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00872 (Transposase_mut); PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019041 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057803709.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057803709.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057803709.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057803709.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057803709.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:56922641 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B44,B50,B68,C64,D5 |
Chr3:56922657 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr3:56922666 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr3:56922699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr3:56922726 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A6,B105,B66,C4 |
Chr3:56922747 |
C |
T |
EMS_canonical_SNV | stop_gained | 10 | A14,A2,A4,B118,B124,B85,C1,C14,C17,C45 |
Chr3:56922749 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B117,B118,B66,B82,C62 |
Chr3:56922808 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B68,C83 |
Chr3:56922810 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C17,C77 |
Chr3:56922838 |
TTG |
T |
2bp_deletion | frameshift_variant | 4 | A8,B127,B18,D8 |
Chr3:56922838 |
TTG |
T |
2bp_deletion | CDS_variant | 4 | A8,B127,B18,D8 |
Chr3:56922879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803709.1PF03108
DBD_Tnp_Mut 192-247 aa
PF10551
MULE 389-485 aa
PF00872
Transposase_mut 407-526 aa
PF04434
SWIM 638-667 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803709.1 |
Pfam | PF03108 |
DBD_Tnp_Mut | Family | 192 | 247 | 3.5e-08 | 33.7 | MuDR family transposase |
XP_057803709.1 |
Pfam | PF10551 |
MULE | Domain | 389 | 485 | 1.7e-17 | 64.3 | MULE transposase domain |
XP_057803709.1 |
Pfam | PF00872 |
Transposase_mut | Family | 407 | 526 | 3.1e-07 | 30.3 | Transposase, Mutator family |
XP_057803709.1 |
Pfam | PF04434 |
SWIM | Domain | 638 | 667 | 2e-10 | 40.7 | SWIM zinc finger |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。