当前解析结果
SmilChr03G003780| 统一新 Gene ID | SmilChr03G003780 |
|---|---|
| 名称 | SmilChr03G003780 |
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 56928008 - 56930471 / - |
| NCBI Gene ID | LOC131014634 |
|---|---|
| GeneID | 131014634 |
| locus_tag | - |
| NCBI Name | LOC131014634 |
| 原始查询 | SmilChr03G003780 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| 产物 | LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 |
| Arabidopsis | -- |
| Rice | -- |
| GO | GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014634 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057798649.1 |
| 2 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057798654.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057798654.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057798654.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057798649.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:56928212 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,C42 |
Chr3:56928219 |
CA |
C |
1bp_deletion | frameshift_variant | 7 | A2,B103,B117,B118,B82,B98,C6 |
Chr3:56928287 |
CT |
C |
1bp_deletion | frameshift_variant | 19 | A2,A25,B100,B114,B117,B118,B133,B137,B14,B27,B51,B55,B59,B73,B80,B82,B98,C15,C42 |
Chr3:56928898 |
T |
TA |
1bp_insertion | frameshift_variant | 2 | B75,C54 |
Chr3:56928898 |
T |
TA |
1bp_insertion | CDS_variant | 2 | B75,C54 |
Chr3:56929447 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A15,B138,B17,C43,C55 |
Chr3:56929460 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B75,C54 |
Chr3:56929709 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B4,C38 |
Chr3:56929786 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B56,B96,C13,C50,C83 |
Chr3:56929798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B73,C65 |
Chr3:56929800 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B73,C65 |
Chr3:56929973 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798649.1PF13947
GUB_WAK_bind 27-90 aa
XP_057798650.1PF13947
GUB_WAK_bind 27-90 aa
XP_057798651.1PF13947
GUB_WAK_bind 27-90 aa
XP_057798652.1PF13947
GUB_WAK_bind 27-90 aa
XP_057798653.1PF13947
GUB_WAK_bind 27-90 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798649.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 27 | 90 | 1.6e-15 | 58.0 | Wall-associated receptor kinase galacturonan-binding |
XP_057798650.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 27 | 90 | 1.5e-15 | 58.0 | Wall-associated receptor kinase galacturonan-binding |
XP_057798651.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 27 | 90 | 1.5e-15 | 58.0 | Wall-associated receptor kinase galacturonan-binding |
XP_057798652.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 27 | 90 | 1.6e-15 | 57.9 | Wall-associated receptor kinase galacturonan-binding |
XP_057798653.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 27 | 90 | 1.5e-15 | 58.0 | Wall-associated receptor kinase galacturonan-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
6 records
下载 cDNA FASTA6 records
下载 CDS FASTA6 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。