Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003781`

染色体: Chr03 坐标: 56932138-56936060 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003781`
名称	SmilChr03G003781
描述	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	56932138 - 56936060 / `-`

ID 对照

NCBI Gene ID	`LOC131014635`
GeneID	`131014635`
locus_tag	`-`
NCBI Name	`LOC131014635`
原始查询	`SmilChr03G003781`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7
产物	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.7
Arabidopsis	`AT5G38280` (PR5K) PR5-like receptor kinase [Source:NCBI gene (formerly Entrezgene);Acc:833810] identity=51.5; qcov=0.424; evalue=8.47e-104; confidence=low
Rice	`Os01g0113300` (OsRLCK3) - identity=36.5; qcov=0.936; evalue=3.73e-131; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0030247 (polysaccharide binding)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind)
InterPro	-
eggNOG	-
NR	GeneID:131014635

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057798655.1`
2	Nucleus	细胞核	0.00000	`XP_057798655.1`
3	Chromosome	染色体	0.00000	`XP_057798655.1`
4	Centromere	着丝粒	0.00000	`XP_057798655.1`
5	Chromatin	染色质	0.00000	`XP_057798655.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:56932339`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B47,B62,C14
`Chr3:56932431`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr3:56932501`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B19,B76,D4
`Chr3:56932562`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:56932586`	`ACT`	`A`	2bp_deletion	frameshift_variant	1	C79
`Chr3:56932586`	`ACT`	`A`	2bp_deletion	CDS_variant	1	C79
`Chr3:56932683`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B46
`Chr3:56932683`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr3:56932786`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr3:56932809`	`GA`	`G`	1bp_deletion	frameshift_variant	1	A6
`Chr3:56932809`	`GA`	`G`	1bp_deletion	CDS_variant	1	A6
`Chr3:56932849`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798655.1

729 aa

364

729

GUB_WAK_bind

PK_Tyr_Ser-Thr

Pkinase

PF13947 GUB_WAK_bind 31-94 aa PF07714 PK_Tyr_Ser-Thr 388-662 aa PF00069 Pkinase 389-660 aa

XP_057798656.1

719 aa

360

719

GUB_WAK_bind

PK_Tyr_Ser-Thr

Pkinase

PF13947 GUB_WAK_bind 31-94 aa PF07714 PK_Tyr_Ser-Thr 378-652 aa PF00069 Pkinase 379-650 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798655.1`	Pfam	`PF13947`	GUB_WAK_bind	Domain	31	94	2.9e-16	60.3	Wall-associated receptor kinase galacturonan-binding
`XP_057798655.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	388	662	2.1e-46	159.0	Protein tyrosine and serine/threonine kinase
`XP_057798655.1`	Pfam	`PF00069`	Pkinase	Domain	389	660	1.3e-47	163.1	Protein kinase domain
`XP_057798656.1`	Pfam	`PF13947`	GUB_WAK_bind	Domain	31	94	2.8e-16	60.4	Wall-associated receptor kinase galacturonan-binding
`XP_057798656.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	378	652	2e-46	159.1	Protein tyrosine and serine/threonine kinase
`XP_057798656.1`	Pfam	`PF00069`	Pkinase	Domain	379	650	1.3e-47	163.2	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942672.1
TATTATCTTTTACCCAATCAAATTGTTAAATTGCGGAAAAGCCGTACGTTTTATCTGAGAGAAAGTAGATACACACACGCTCTCTCCTCTCCCCAGCTTCTCTCTTCACATTCCCTCATGAAGAATTCGTAAAGAAGTTGCAGTACTCTAATCAGGTGCCTCTTTTGGAGCGTTGTGGCAGCAGACTGTTAATGCCGCTGGCTCCATCTGCTTGACTTTTCTCCGTGGTCCCTCTCGAATCGATGAAACTAATTCTTGCT...

XM_057942673.1
AAAGCCGTACGTTTTATCTGAGAGAAAGTAGATACACACACGCTCTCTCCTCTCCCCAGCTTCTCTCTTCACATTCCCTCATGAAGAATTCGTAAAGAAGTTGCAGTACTCTAATCAGGCAAGTTTTCTCTCTCTCTCTCTCTCTCTCTACCAAGGCAAGTTCCTTTCACATAGATTTATTTAGTTGGTCATCGTTTTACCGACAAATTACACTTCGCAAAATCTCTTCAAGTGTAGCAGCTAAGTCATCGCCTCATCAG...

CDS

2 records

下载 CDS FASTA

LOC131014635
ATGATCTCTGAAAACCATCTCCTCGCATATTGGTCTCTCTTAATTATTCTGCTTCTCCATTCCCTTCAAAGCTCTCATGCTAGCCTTTCCTGTAGCCCTTCTCGTTGCGGCATTATTCCCAATATTAGCGATCCTTTCCGGCTGAAGGATGATCCCAAAAACTGCGGTGATCCCAAATACGAATTAGCCTGTGAAAACAACGTCGCCTTCATGTATCTGAACTCTCAAAAGTACTTGGTCAAAGCAGTCAATTATGGGAA...

Protein

2 records

下载 Protein FASTA

XP_057798655.1
MISENHLLAYWSLLIILLLHSLQSSHASLSCSPSRCGIIPNISDPFRLKDDPKNCGDPKYELACENNVAFMYLNSQKYLVKAVNYGNSTIRLADPSINDDTCSFPKHSTYAYNFSGEYPFSTYSDRILRDESVAWPINFVSCPYRLEDSSNFTEITDCVSGENSFGASNLSRSRYTYVKVGRLRALDIGDKCDIDLIVMTSWKFKNFKNVTLSKLHDALLYGFELSWLQFRCIECKGGWECTTIDAQLDGCTDDTFRLKI...

XP_057798656.1
MISENHLLAYWSLLIILLLHSLQSSHASLSCSPSRCGIIPNISDPFRLKDDPKNCGDPKYELACENNVAFMYLNSQKYLVKAVNYGNSTIRLADPSINDDTCSFPKHSTYAYNFSGEYPFSTYSDRILRDESVAWPINFVSCPYRLEDSSNFTEITDCVSGENSFGASNLSRSRYTYVKVGRLRALDIGDKCDIDLIVMTSWKFKNFKNVTLSKLHDALLYGFELSWLQFRCIECKGGWECTTIDAQLDGCTDDTFRLKI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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