Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003785`

染色体: Chr03 坐标: 56965623-56970706 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003785`
名称	SmilChr03G003785
描述	rust resistance kinase Lr10-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	56965623 - 56970706 / `-`

ID 对照

NCBI Gene ID	`LOC131014639`
GeneID	`131014639`
locus_tag	`-`
NCBI Name	`LOC131014639`
原始查询	`SmilChr03G003785`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	rust resistance kinase Lr10-like
产物	rust resistance kinase Lr10-like
Arabidopsis	`AT5G38280` (PR5K) PR5-like receptor kinase [Source:NCBI gene (formerly Entrezgene);Acc:833810] identity=49.2; qcov=0.729; evalue=1.95e-104; confidence=high
Rice	`Os01g0115600` (OsRLCK11) - identity=48.2; qcov=0.864; evalue=1.82e-119; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131014639

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057798658.1`
2	Nucleus	细胞核	0.00000	`XP_057798658.1`
3	Chromosome	染色体	0.00000	`XP_057798658.1`
4	Centromere	着丝粒	0.00000	`XP_057798658.1`
5	Chromatin	染色质	0.00000	`XP_057798658.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:56965953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr3:56965993`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr3:56966001`	`G`	`A`	EMS_canonical_SNV	stop_gained	97	A10,A11,A13,A2,A20,A22,A23,A24,A3,A6,A8,B100,B101,B102,B103,B106,B112,B113,B114,B118,B119,B120,B124,B126,B127,B132,B137,B139,B14,B15,B21,B22,B25,B26,B31,B33,B38,B39,B44,B49,B5,B51,B52,B57,B59,B6,B61,B62,B65,B66,B69,B71,B72,B74,B77,B79,B81,B82,B84,B9,B98,B99,C1,C11,C15,C16,C17,C19,C21,C25,C26,C34,C35,C4,C40,C44,C45,C46,C5,C51,C56,C58,C6,C65,C69,C7,C71,C80,C82,C84,C85,C86,C9,D1,D7,D8,D9
`Chr3:56966012`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr3:56966154`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B75,C45,D10,D11
`Chr3:56966193`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B110,B32,C25,C45,D3
`Chr3:56966206`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B111,B28,C60,C8
`Chr3:56966297`	`C`	`CG`	1bp_insertion	frameshift_variant	9	A11,A25,B110,B15,B20,B93,C3,C7,C79
`Chr3:56966317`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A16,B140,D6
`Chr3:56966350`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B135
`Chr3:56966371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B10,B111,B117,C60,C8
`Chr3:56966373`	`G`	`A`	EMS_canonical_SNV	stop_gained	9	B124,B18,B79,B81,C10,C13,C64,C66,C70

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798658.1

413 aa

206

413

PK_Tyr_Ser-Thr

Pkinase

PF07714 PK_Tyr_Ser-Thr 110-378 aa PF00069 Pkinase 111-376 aa

XP_057798660.1

413 aa

206

413

PK_Tyr_Ser-Thr

Pkinase

PF07714 PK_Tyr_Ser-Thr 110-378 aa PF00069 Pkinase 111-376 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798658.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	110	378	1.6e-46	159.4	Protein tyrosine and serine/threonine kinase
`XP_057798658.1`	Pfam	`PF00069`	Pkinase	Domain	111	376	6.7e-47	160.8	Protein kinase domain
`XP_057798660.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	110	378	1.6e-46	159.4	Protein tyrosine and serine/threonine kinase
`XP_057798660.1`	Pfam	`PF00069`	Pkinase	Domain	111	376	6.7e-47	160.8	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942677.1
CTGCACTCCATTTGGAGAAGAACTATGAATAGTGTGGTGTTGTTTACAATCAATGAATCAACAATGATGAAATGTTCATCTCTCTTTATTCTTTTACTACTCTATTCCTTTGGATCTTGCAATGCAAAGTGCAGCCCTTCTGCCTGCGGTATCATTCCCAATATCAGCTCCCCTTTCCGCCTCAAAGGCGACTCCAAAAACTGCGGTGACAGCAGATTTGAATTACGCTGCGAAAACAATGTGACCTCCATCTCTCTCAA...

XM_057942675.1
GAATCAACAATGATGAAATGTTCATCTCTCTTTATTCTTTTACTACTCTATTCCTTTGGATCTTGCAATGCAAAGTGCAGCCCTTCTGCCTGCGGTATCATTCCCAATATCAGCTCCCCTTTCCGCCTCAAAGGCGACTCCAAAAACTGCGGTGACAGCAGATTTGAATTACGCTGCGAAAACAATGTGACCTCCATCTCTCTCAACTCTCATAAATACTATGTCAAAGCCATCAACTACCATAACTCCACCATCAGGCT...

CDS

2 records

下载 CDS FASTA

LOC131014639
ATGTCAGGGCCGGCCCTGCTTGTATTCACCATCTTTGGATTCATCGCTCTAACACTACTCGTATATCATATTTTCTCTCTATTATCCAGCATTATTTATCTCCAACCCGGCCAATTTCCCCCGCTGCTCGTTGTACCAGTCACCATCGACTTCATCATCTTGGCACCAAGGGTCATCGTGTTTCCTATTGTGTTGTGGCTTTTGATCTACAAATTCCGAAGAAGACATTTGTCCATGTATAACACAATAGAGTCATTCCT...

Protein

2 records

下载 Protein FASTA

XP_057798658.1
MSGPALLVFTIFGFIALTLLVYHIFSLLSSIIYLQPGQFPPLLVVPVTIDFIILAPRVIVFPIVLWLLIYKFRRRHLSMYNTIESFLQSDNKLTTIRYSYSDIKKMTRYFQEKLGEGGYGSVYKGKLRSGHDVAVKLLRKSGANDQDFMNEIATLGRIHHVNVAKLVGYCAQGSKRALVFDFMPNGSLEKYLFNRDKMDSLNWDTKFDIAVGIARGIEYLHRGCDIQILHFDIKPHNILLDDKFIPKISDFGLAKFCSTD...

XP_057798660.1
MSGPALLVFTIFGFIALTLLVYHIFSLLSSIIYLQPGQFPPLLVVPVTIDFIILAPRVIVFPIVLWLLIYKFRRRHLSMYNTIESFLQSDNKLTTIRYSYSDIKKMTRYFQEKLGEGGYGSVYKGKLRSGHDVAVKLLRKSGANDQDFMNEIATLGRIHHVNVAKLVGYCAQGSKRALVFDFMPNGSLEKYLFNRDKMDSLNWDTKFDIAVGIARGIEYLHRGCDIQILHFDIKPHNILLDDKFIPKISDFGLAKFCSTD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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