当前解析结果
SmilChr03G003797| 统一新 Gene ID | SmilChr03G003797 |
|---|---|
| 名称 | SmilChr03G003797 |
| 描述 | PR5-like receptor kinase |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 57051069 - 57052072 / - |
| NCBI Gene ID | LOC131014651 |
|---|---|
| GeneID | 131014651 |
| locus_tag | - |
| NCBI Name | LOC131014651 |
| 原始查询 | SmilChr03G003797 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | PR5-like receptor kinase |
| 产物 | PR5-like receptor kinase |
| Arabidopsis | AT1G67000 (AT1G67000)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843018] identity=45.3; qcov=0.785; evalue=1.53e-23; confidence=medium |
| Rice | Os01g0690800- identity=46.7; qcov=0.681; evalue=3.86e-22; confidence=medium |
| GO | GO:0004672 (protein kinase activity) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014651 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057798678.1 |
| 2 | Cytoplasm | 细胞质 | 0.60000 | XP_057798678.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057798678.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057798678.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057798678.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:57051502 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:57051505 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B10 |
Chr3:57051505 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B10 |
Chr3:57051507 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,C79 |
Chr3:57051535 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr3:57051552 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr3:57051559 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr3:57051583 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | B135,C45 |
Chr3:57051583 |
TG |
T |
1bp_deletion | CDS_variant | 2 | B135,C45 |
Chr3:57051584 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B123,B14,C71 |
Chr3:57051699 |
G |
A |
EMS_canonical_SNV | stop_gained | 34 | A13,A15,A19,A3,B1,B108,B11,B13,B134,B138,B17,B19,B34,B38,B4,B46,B5,B65,B73,B75,B8,B85,B86,B93,B97,C22,C23,C33,C48,C49,C55,C57,C74,C77 |
Chr3:57051762 |
T |
TCA |
2bp_insertion | frameshift_variant | 5 | B10,B95,C43,C79,D11 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。