Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003806`

染色体: Chr03 坐标: 57130065-57133107 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003806`
名称	SmilChr03G003806
描述	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	57130065 - 57133107 / `-`

ID 对照

NCBI Gene ID	`LOC131014662`
GeneID	`131014662`
locus_tag	`-`
NCBI Name	`LOC131014662`
原始查询	`SmilChr03G003806`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5
产物	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 2.5
Arabidopsis	`AT1G66910` (AT1G66910) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843009] identity=33.1; qcov=0.983; evalue=2.4e-101; confidence=low
Rice	`Os01g0113300` (OsRLCK3) - identity=37.6; qcov=0.903; evalue=1.54e-134; confidence=medium
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0030247 (polysaccharide binding)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind)
InterPro	-
eggNOG	-
NR	GeneID:131014662

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057798685.1`
2	Nucleus	细胞核	0.00000	`XP_057798685.1`
3	Chromosome	染色体	0.00000	`XP_057798685.1`
4	Centromere	着丝粒	0.00000	`XP_057798685.1`
5	Chromatin	染色质	0.00000	`XP_057798685.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:57130321`	`CAA`	`C`	2bp_deletion	frameshift_variant	158	A1,A10,A13,A14,A20,A21,A3,A4,A5,A6,A7,B1,B10,B102,B103,B104,B105,B107,B108,B109,B11,B110,B111,B114,B115,B118,B119,B12,B121,B122,B124,B125,B128,B129,B132,B134,B135,B136,B140,B16,B19,B23,B24,B28,B29,B3,B30,B32,B33,B34,B35,B37,B39,B4,B41,B42,B43,B44,B45,B47,B48,B49,B50,B52,B53,B54,B55,B57,B59,B60,B62,B63,B64,B66,B67,B7,B70,B71,B72,B74,B76,B78,B79,B8,B83,B85,B86,B87,B88,B89,B92,B93,B95,B97,B98,C1,C12,C13,C14,C15,C18,C2,C20,C23,C24,C29,C3,C30,C31,C32,C33,C35,C36,C38,C39,C41,C42,C43,C45,C46,C49,C50,C51,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C65,C68,C7,C70,C71,C76,C77,C78,C79,C8,C80,C83,C85,C86,C87,C9,D1,D10,D11,D2,D4,D6,D8,D9
`Chr3:57130324`	`T`	`TGG`	2bp_insertion	frameshift_variant	158	A1,A10,A13,A14,A20,A21,A3,A4,A5,A6,A7,B1,B10,B102,B103,B104,B105,B107,B108,B109,B11,B110,B111,B114,B115,B118,B119,B12,B121,B122,B124,B125,B128,B129,B132,B134,B135,B136,B140,B16,B19,B23,B24,B28,B29,B3,B30,B32,B33,B34,B35,B37,B39,B4,B41,B42,B43,B44,B45,B47,B48,B49,B50,B52,B53,B54,B55,B57,B59,B60,B62,B63,B64,B66,B67,B7,B70,B71,B72,B74,B76,B78,B79,B8,B83,B85,B86,B87,B88,B89,B92,B93,B95,B97,B98,C1,C12,C13,C14,C15,C18,C2,C20,C23,C24,C29,C3,C30,C31,C32,C33,C35,C36,C38,C39,C41,C42,C43,C45,C46,C49,C50,C51,C54,C55,C56,C57,C58,C59,C6,C60,C61,C62,C63,C65,C68,C7,C70,C71,C76,C77,C78,C79,C8,C80,C83,C85,C86,C87,C9,D1,D10,D11,D2,D4,D6,D8,D9
`Chr3:57130371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117
`Chr3:57130383`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B111
`Chr3:57130413`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B75
`Chr3:57130475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B127,B60,B95,C72
`Chr3:57130482`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C54
`Chr3:57130482`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C54
`Chr3:57130515`	`G`	`A`	EMS_canonical_SNV	stop_gained	3	B127,B50,C72
`Chr3:57130515`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B127,B50,C72
`Chr3:57130546`	`A`	`AT`	1bp_insertion	frameshift_variant	65	A13,A14,A19,A20,A5,B1,B10,B102,B104,B109,B124,B129,B16,B18,B19,B24,B25,B28,B29,B3,B30,B32,B33,B35,B44,B47,B49,B50,B52,B53,B54,B57,B62,B63,B64,B65,B66,B67,B70,B75,B79,B88,B89,B95,B97,B98,C13,C20,C3,C30,C31,C32,C33,C38,C39,C46,C49,C55,C68,C77,C78,C80,C86,C87,D9
`Chr3:57130547`	`C`	`CAT`	2bp_insertion	frameshift_variant	50	A13,A14,A19,A5,B102,B104,B109,B124,B129,B16,B18,B25,B28,B29,B3,B30,B32,B33,B35,B44,B47,B49,B50,B52,B57,B62,B64,B65,B67,B70,B75,B79,B88,B89,B95,B98,C20,C3,C30,C31,C32,C33,C39,C46,C49,C68,C80,C86,C87,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798685.1

703 aa

352

703

GUB_WAK_bind

PK_Tyr_Ser-Thr

Pkinase

PF13947 GUB_WAK_bind 42-104 aa PF07714 PK_Tyr_Ser-Thr 376-652 aa PF00069 Pkinase 378-650 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798685.1`	Pfam	`PF13947`	GUB_WAK_bind	Domain	42	104	1.5e-14	54.8	Wall-associated receptor kinase galacturonan-binding
`XP_057798685.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	376	652	5.4e-46	157.7	Protein tyrosine and serine/threonine kinase
`XP_057798685.1`	Pfam	`PF00069`	Pkinase	Domain	378	650	1.6e-47	162.8	Protein kinase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057942702.1
GAGGTCGAAAAAACTGGAGCAGAAATGATGATCAAATACTTCTTGATGCAAATAATGAAGTAGAGGCCATCTAACAATTGTTTTTCTAAAGTCAATAAAGTGAAAAATAAATACAAGTGACAACTTTGACGAATGCCGTTTTGTTCAGACTTATAGTCAGAGATTCGTGCATATGACTGGGTCACTATAGTCTTGTTTCCTTTTAATGAGTGAATTTTGTAGTGGAAAAAAATCTGAAGCACGAATGATGATTACTCAAA...

CDS

1 records

下载 CDS FASTA

LOC131014662
ATGAGTGAATTTTGTAGTGGAAAAAAATCTGAAGCACGAATGATGATTACTCAAAACTTCATCTTCCTCTTCACTTGTTCATCTCTCTTGATTGTTTTCTTTCAAACTTGTAATGCATTCGACTGCACCCCTTCTGCGTGTGGCGTTATTCGCAATATTAGCTCCCCTTTCCGCCTCAAGGGTGATCCCAACCACTGTGGTGATCGCAAATACGAATTAGTCTGCGAAAACAACGTCGCCTCAATTCATCTAAACTCCCA...

Protein

1 records

下载 Protein FASTA

XP_057798685.1
MSEFCSGKKSEARMMITQNFIFLFTCSSLLIVFFQTCNAFDCTPSACGVIRNISSPFRLKGDPNHCGDRKYELVCENNVASIHLNSHKYLVKTINYSDFTIRLAHVSISKNTCSFPMSSAYNLFDPYVLYFNQLIFFMSCEHPLQNSSLSTQVTDCEQGRHTYIKVGNMRLADVEYMCTIVSVVATAWNFKVLKNVSLSEIHQSLLYGFTLSWSSNFLCRKCKVGCILEEPNGTATCAEPHSDLYYRWDYFMESFRPTRP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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