当前解析结果
SmilChr03G003809| 统一新 Gene ID | SmilChr03G003809 |
|---|---|
| 名称 | SmilChr03G003809 |
| 描述 | uncharacterized SmilChr03G003809 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 57149189 - 57152194 / - |
| NCBI Gene ID | LOC131014665 |
|---|---|
| GeneID | 131014665 |
| locus_tag | - |
| NCBI Name | LOC131014665 |
| 原始查询 | SmilChr03G003809 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os01g0115700; species=rice; confidence=medium |
| 产物 | hit=Os01g0115700; species=rice; confidence=medium |
| Arabidopsis | AT1G67000 (AT1G67000)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843018] identity=46.9; qcov=0.526; evalue=6.94e-100; confidence=medium |
| Rice | Os01g0115700- identity=37.2; qcov=0.937; evalue=5.43e-130; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014665 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057798688.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057798688.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057798688.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057798688.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057798688.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:57149327 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr3:57149375 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr3:57149384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:57149387 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C72 |
Chr3:57149411 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C28,C75 |
Chr3:57149423 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr3:57149488 |
A |
AT |
1bp_insertion | frameshift_variant | 1 | D6 |
Chr3:57149488 |
A |
AT |
1bp_insertion | CDS_variant | 1 | D6 |
Chr3:57149500 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B51,C70,C73 |
Chr3:57149517 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C72 |
Chr3:57149517 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C72 |
Chr3:57149532 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798688.1PF13947
GUB_WAK_bind 33-96 aa
PF07714
PK_Tyr_Ser-Thr 372-648 aa
PF00069
Pkinase 374-646 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798688.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 33 | 96 | 4.1e-16 | 59.8 | Wall-associated receptor kinase galacturonan-binding |
XP_057798688.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 372 | 648 | 2.7e-45 | 155.4 | Protein tyrosine and serine/threonine kinase |
XP_057798688.1 |
Pfam | PF00069 |
Pkinase | Domain | 374 | 646 | 1.7e-46 | 159.5 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。