当前解析结果
SmilChr03G003810| 统一新 Gene ID | SmilChr03G003810 |
|---|---|
| 名称 | SmilChr03G003810 |
| 描述 | receptor-like protein EIX2 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 57153934 - 57154326 / + |
| NCBI Gene ID | LOC131019048 |
|---|---|
| GeneID | 131019048 |
| locus_tag | - |
| NCBI Name | LOC131019048 |
| 原始查询 | SmilChr03G003810 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor-like protein EIX2 |
| 产物 | receptor-like protein EIX2 |
| Arabidopsis | AT4G13920 (RLP50)receptor like protein 50 [Source:NCBI gene (formerly Entrezgene);Acc:827026] identity=35.5; qcov=0.954; evalue=7.2e-09; confidence=low |
| Rice | Os01g0601625- identity=43.4; qcov=0.938; evalue=3.84e-23; confidence=medium |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF13516 (LRR_6); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019048 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057803714.1 |
| 2 | Secreted | 分泌到胞外 | 0.20000 | XP_057803714.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057803714.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057803714.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057803714.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:57153960 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,B71 |
Chr3:57153983 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C37,C56 |
Chr3:57154076 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:57154083 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:57154084 |
C |
T |
EMS_canonical_SNV | stop_gained | 12 | A7,A9,B14,B44,B53,B69,B80,C17,C18,C85,C86,C87 |
Chr3:57154089 |
G |
A |
EMS_canonical_SNV | stop_gained | 39 | A20,A22,A7,A9,B1,B106,B108,B11,B119,B13,B137,B14,B34,B41,B43,B44,B45,B53,B58,B69,B74,B80,B86,C17,C18,C20,C23,C38,C57,C69,C7,C71,C72,C8,C82,C85,C86,C87,D5 |
Chr3:57154101 |
TTC |
T |
2bp_deletion | frameshift_variant | 15 | A22,B119,B13,B43,B45,B58,C20,C23,C57,C7,C71,C72,C8,C82,D5 |
Chr3:57154102 |
T |
TA |
1bp_insertion | frameshift_variant | 27 | A20,A7,A9,B1,B106,B108,B11,B137,B14,B27,B34,B41,B44,B45,B53,B69,B74,B80,B86,C17,C18,C23,C38,C69,C85,C86,C87 |
Chr3:57154105 |
TC |
T |
1bp_deletion | frameshift_variant | 26 | A20,A7,A9,B1,B106,B108,B11,B137,B14,B27,B34,B44,B45,B53,B69,B74,B80,B86,C17,C18,C23,C38,C69,C85,C86,C87 |
Chr3:57154107 |
A |
ATG |
2bp_insertion | frameshift_variant | 16 | A22,B119,B13,B24,B43,B45,B58,C20,C23,C57,C7,C71,C72,C8,C82,D5 |
Chr3:57154148 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B37 |
Chr3:57154163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803714.1PF13516
LRR_6 2-16 aa
PF13855
LRR_8 2-66 aa
PF00560
LRR_1 3-25 aa
PF13516
LRR_6 106-120 aa
PF00560
LRR_1 108-129 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803714.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 2 | 16 | 3.7e-07 | 30.4 | Leucine Rich repeat |
XP_057803714.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 2 | 66 | 3e-11 | 43.6 | Leucine rich repeat |
XP_057803714.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 3 | 25 | 1.1e-08 | 34.2 | Leucine Rich Repeat |
XP_057803714.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 106 | 120 | 3.7e-07 | 30.4 | Leucine Rich repeat |
XP_057803714.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 108 | 129 | 1.1e-08 | 34.2 | Leucine Rich Repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。