当前解析结果
SmilChr03G003812| 统一新 Gene ID | SmilChr03G003812 |
|---|---|
| 名称 | SmilChr03G003812 |
| 描述 | probable receptor-like protein kinase At5g20050 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 57162719 - 57165589 / - |
| NCBI Gene ID | LOC131014667 |
|---|---|
| GeneID | 131014667 |
| locus_tag | - |
| NCBI Name | LOC131014667 |
| 原始查询 | SmilChr03G003812 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable receptor-like protein kinase At5g20050 |
| 产物 | probable receptor-like protein kinase At5g20050 |
| Arabidopsis | AT5G38280 (PR5K)PR5-like receptor kinase [Source:NCBI gene (formerly Entrezgene);Acc:833810] identity=46.4; qcov=0.491; evalue=2.88e-101; confidence=medium |
| Rice | Os01g0113300 (OsRLCK3)- identity=36.9; qcov=0.93; evalue=1.97e-131; confidence=medium |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation); GO:0030247 (polysaccharide binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF13947 (GUB_WAK_bind) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014667 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057798691.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057798691.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057798691.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057798691.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057798691.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:57162988 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | B100,C48 |
Chr3:57162988 |
TG |
T |
1bp_deletion | CDS_variant | 2 | B100,C48 |
Chr3:57162990 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr3:57163012 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B93,C59 |
Chr3:57163035 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B91,C76 |
Chr3:57163045 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B64,B91,C76 |
Chr3:57163075 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A15,A21,B76,C68 |
Chr3:57163086 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A9 |
Chr3:57163087 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr3:57163090 |
A |
AAT |
2bp_insertion | frameshift_variant | 1 | A9 |
Chr3:57163090 |
A |
AAT |
2bp_insertion | CDS_variant | 1 | A9 |
Chr3:57163092 |
ACT |
A |
2bp_deletion | frameshift_variant | 1 | A9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798691.1PF13947
GUB_WAK_bind 42-104 aa
PF07714
PK_Tyr_Ser-Thr 375-651 aa
PF00069
Pkinase 377-649 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798691.1 |
Pfam | PF13947 |
GUB_WAK_bind | Domain | 42 | 104 | 9.7e-15 | 55.4 | Wall-associated receptor kinase galacturonan-binding |
XP_057798691.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 375 | 651 | 5.2e-44 | 151.2 | Protein tyrosine and serine/threonine kinase |
XP_057798691.1 |
Pfam | PF00069 |
Pkinase | Domain | 377 | 649 | 6.2e-46 | 157.6 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。