Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003822`

染色体: Chr03 坐标: 57265123-57273040 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003822`
名称	SmilChr03G003822
描述	histone-lysine N-methyltransferase ATX5
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	57265123 - 57273040 / `-`

ID 对照

NCBI Gene ID	`LOC131014675`
GeneID	`131014675`
locus_tag	`-`
NCBI Name	`LOC131014675`
原始查询	`SmilChr03G003822`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	histone-lysine N-methyltransferase ATX5
产物	histone-lysine N-methyltransferase ATX5
Arabidopsis	`AT5G53430` (SDG29) SET domain group 29 [Source:NCBI gene (formerly Entrezgene);Acc:835424] identity=66.6; qcov=0.95; evalue=0; confidence=high
Rice	`Os01g0218800` (OsSET1) - identity=56.8; qcov=0.946; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0006357 (regulation of transcription by RNA polymerase II)
KEGG	-
Pfam	PF00628 (PHD); PF00855 (PWWP); PF00856 (SET); PF13771 (zf-HC5HC2H); PF13831 (PHD_2); PF13832 (zf-HC5HC2H_2)
InterPro	-
eggNOG	-
NR	GeneID:131014675

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057798700.1`
2	Nucleoplasm	核质	1.00000	`XP_057798702.1`
3	Nuclear body	核内小体	0.40000	`XP_057798702.1`
4	Cytoplasm	细胞质	0.20000	`XP_057798702.1`
5	Chromosome	染色体	0.00000	`XP_057798700.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:57266514`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,C48
`Chr3:57266859`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C40,C44
`Chr3:57267178`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr3:57268065`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B105,B135,B19,C38,C62
`Chr3:57268794`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B135,B28
`Chr3:57268836`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B11,B12,B136,B26,C68
`Chr3:57268840`	`C`	`T`	EMS_canonical_SNV	stop_gained	58	A19,A20,A24,B1,B101,B103,B11,B112,B118,B12,B128,B136,B140,B15,B17,B26,B31,B32,B35,B46,B5,B54,B57,B74,B75,B76,B80,B87,B88,B91,B92,B94,B97,C11,C17,C19,C2,C21,C27,C3,C35,C4,C46,C47,C51,C54,C60,C63,C64,C66,C68,C69,C7,C71,C75,C85,D1,D6
`Chr3:57268851`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B37,B50,B60
`Chr3:57268864`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr3:57268891`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B118,B49,B67,C55,C64
`Chr3:57269045`	`TC`	`T`	1bp_deletion	frameshift_variant	2	B87,C78
`Chr3:57269045`	`TC`	`T`	1bp_deletion	CDS_variant	2	B87,C78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798700.1

1080 aa

540

1080

PWWP

PHD

PHD_2

zf-HC5HC2H_2

zf-HC5HC2H

SET

PF00855 PWWP 269-363 aa PF00628 PHD 459-509 aa PF13831 PHD_2 663-698 aa PF13832 zf-HC5HC2H_2 705-817 aa PF13771 zf-HC5HC2H 727-818 aa PF00856 SET 949-1054 aa

XP_057798701.1

1079 aa

540

1079

PWWP

PHD

PHD_2

zf-HC5HC2H_2

zf-HC5HC2H

SET

PF00855 PWWP 269-363 aa PF00628 PHD 458-508 aa PF13831 PHD_2 662-697 aa PF13832 zf-HC5HC2H_2 704-816 aa PF13771 zf-HC5HC2H 726-817 aa PF00856 SET 948-1053 aa

XP_057798702.1

877 aa

438

877

PWWP

PHD

PHD_2

zf-HC5HC2H_2

zf-HC5HC2H

SET

PF00855 PWWP 66-160 aa PF00628 PHD 256-306 aa PF13831 PHD_2 460-495 aa PF13832 zf-HC5HC2H_2 502-614 aa PF13771 zf-HC5HC2H 524-615 aa PF00856 SET 746-851 aa

XP_057798703.1

876 aa

438

876

PWWP

PHD

PHD_2

zf-HC5HC2H_2

zf-HC5HC2H

SET

PF00855 PWWP 66-160 aa PF00628 PHD 255-305 aa PF13831 PHD_2 459-494 aa PF13832 zf-HC5HC2H_2 501-613 aa PF13771 zf-HC5HC2H 523-614 aa PF00856 SET 745-850 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798700.1`	Pfam	`PF00855`	PWWP	Domain	269	363	2.1e-12	48.1	PWWP domain
`XP_057798700.1`	Pfam	`PF00628`	PHD	Domain	459	509	2.7e-09	37.6	PHD-finger
`XP_057798700.1`	Pfam	`PF13831`	PHD_2	Family	663	698	4.4e-12	46.0	PHD-finger
`XP_057798700.1`	Pfam	`PF13832`	zf-HC5HC2H_2	Domain	705	817	1.1e-26	93.9	PHD-zinc-finger like domain
`XP_057798700.1`	Pfam	`PF13771`	zf-HC5HC2H	Domain	727	818	5.9e-13	49.5	PHD-like zinc-binding domain
`XP_057798700.1`	Pfam	`PF00856`	SET	Family	949	1054	7.1e-25	88.2	SET domain
`XP_057798701.1`	Pfam	`PF00855`	PWWP	Domain	269	363	2.2e-12	48.0	PWWP domain
`XP_057798701.1`	Pfam	`PF00628`	PHD	Domain	458	508	2.6e-09	37.7	PHD-finger
`XP_057798701.1`	Pfam	`PF13831`	PHD_2	Family	662	697	4.4e-12	46.0	PHD-finger
`XP_057798701.1`	Pfam	`PF13832`	zf-HC5HC2H_2	Domain	704	816	1.1e-26	93.9	PHD-zinc-finger like domain
`XP_057798701.1`	Pfam	`PF13771`	zf-HC5HC2H	Domain	726	817	5.9e-13	49.5	PHD-like zinc-binding domain
`XP_057798701.1`	Pfam	`PF00856`	SET	Family	948	1053	6.8e-25	88.3	SET domain
`XP_057798702.1`	Pfam	`PF00855`	PWWP	Domain	66	160	8.8e-13	49.3	PWWP domain
`XP_057798702.1`	Pfam	`PF00628`	PHD	Domain	256	306	9.6e-10	39.1	PHD-finger
`XP_057798702.1`	Pfam	`PF13831`	PHD_2	Family	460	495	3.5e-12	46.3	PHD-finger
`XP_057798702.1`	Pfam	`PF13832`	zf-HC5HC2H_2	Domain	502	614	8.2e-27	94.3	PHD-zinc-finger like domain
`XP_057798702.1`	Pfam	`PF13771`	zf-HC5HC2H	Domain	524	615	4.5e-13	49.9	PHD-like zinc-binding domain
`XP_057798702.1`	Pfam	`PF00856`	SET	Family	746	851	4.6e-25	88.8	SET domain
`XP_057798703.1`	Pfam	`PF00855`	PWWP	Domain	66	160	9e-13	49.3	PWWP domain
`XP_057798703.1`	Pfam	`PF00628`	PHD	Domain	255	305	9.2e-10	39.1	PHD-finger
`XP_057798703.1`	Pfam	`PF13831`	PHD_2	Family	459	494	3.5e-12	46.3	PHD-finger
`XP_057798703.1`	Pfam	`PF13832`	zf-HC5HC2H_2	Domain	501	613	8.2e-27	94.3	PHD-zinc-finger like domain
`XP_057798703.1`	Pfam	`PF13771`	zf-HC5HC2H	Domain	523	614	4.5e-13	49.9	PHD-like zinc-binding domain
`XP_057798703.1`	Pfam	`PF00856`	SET	Family	745	850	4.4e-25	88.9	SET domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XR_009098298.1
AACACTACATTCCATAAAATGGTAAAAACTTTTTCCGGAGACTGTAGTCTAGAAAAGAAAATCTTTATTTGAAAATAAAATTTCTTTCTTTGTCCCTTACGCTTCTCGAGTAGCTTGTTTCTTGGAAGGTACTCTTCTTCACCATATCTTTGCAGAAATTGTGTCTATACCAGGCAGGTTGCCACCATGACTATGGACTTTCAGCACCCACGGCGTAATTTAGCGTCACATTGTTGCAATCACATTCATAGCGCCGAACC...

XM_057942718.1
AACACTACATTCCATAAAATGGTAAAAACTTTTTCCGGAGACTGTAGTCTAGAAAAGAAAATCTTTATTTGAAAATAAAATTTCTTTCTTTGTCCCTTACGCTTCTCGAGTAGCTTGTTTCTTGGAAGGTACTCTTCTTCACCATATCTTTGCAGAAATTGTGTCTATACCAGGCAGGTTGCCACCATGACTATGGACTTTCAGCACCCACGGCGTAATTTAGCGTCACATTGTTGCAATCACATTCATAGCGCCGAACC...

CDS

4 records

下载 CDS FASTA

LOC131014675
ATGATAGTGAAGAAGAGCTTGAAAACGGTAATGCCGATTTTGAAACGGTGCCGAGTCGGCGACTCGGCCGGTGATGACGACGAGTCATCGGTCAATCGGAAGAAACGCAAAACTTCCAATGGTTATTTTCCTCTGCATCTCCTTGGAGAGGCTGCCGCCGGTATAATTCCATTCAGTGGCTATGGAATTCAAAATATTATCGCCAAGTCCGCCGCGGACGGACAAGGTGGAGGGGACGGCGCGGCTTCGGAATCGAGGCG...

Protein

4 records

下载 Protein FASTA

XP_057798700.1
MIVKKSLKTVMPILKRCRVGDSAGDDDESSVNRKKRKTSNGYFPLHLLGEAAAGIIPFSGYGIQNIIAKSAADGQGGGDGAASESRRAEPLKSKEVSRPPLVRTSRGRVQVLPSRFNDSILDNWKKESKNAVRDSALDTEYIPVKHKDNKSSLKPLRIHDDVNILRKQNEEKAKKCRKFSPLSEDEIAELRNESLRSSDSKKYMRPRDSLVTLLEQSEDDYDDDDEEVDDDDEDDDDDDDDDDDDDEYDECIEICGIDTL...

XP_057798701.1
MIVKKSLKTVMPILKRCRVGDSAGDDDESSVNRKKRKTSNGYFPLHLLGEAAAGIIPFSGYGIQNIIAKSAADGQGGGDGAASESRRAEPLKSKEVSRPPLVRTSRGRVQVLPSRFNDSILDNWKKESKNAVRDSALDTEYIPVKHKDNKSSLKPLRIHDDVNILRKQNEEKAKKCRKFSPLSEDEIAELRNESLRSSDSKKYMRPRDSLVTLLEQSEDDYDDDDEEVDDDDEDDDDDDDDDDDDDEYDECIEICGIDTL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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