Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003835`

染色体: Chr03 坐标: 57494674-57498339 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003835`
名称	SmilChr03G003835
描述	calcineurin B-like protein 4
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	57494674 - 57498339 / `-`

ID 对照

NCBI Gene ID	`LOC131014726`
GeneID	`131014726`
locus_tag	`-`
NCBI Name	`LOC131014726`
原始查询	`SmilChr03G003835`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calcineurin B-like protein 4
产物	calcineurin B-like protein 4
Arabidopsis	`AT5G24270` (SOS3) Calcium-binding EF-hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:832494] identity=72.8; qcov=1.02; evalue=1.18e-113; confidence=high
Rice	`Os02g0291000` (OsCBL7) - identity=70.9; qcov=1; evalue=5.4e-109; confidence=high
GO	GO:0005509 (calcium ion binding); GO:0019722 (calcium-mediated signaling); GO:0019900 (kinase binding)
KEGG	-
Pfam	PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:131014726

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057798784.1`
2	Cytoplasm	细胞质	0.40000	`XP_057798784.1`
3	Cytosol	细胞质基质	0.20000	`XP_057798784.1`
4	Vacuole	液泡	0.20000	`XP_057798784.1`
5	Nucleus	细胞核	0.00000	`XP_057798784.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:57495806`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B38,B39,B76
`Chr3:57495821`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A8,B46,B50,B60
`Chr3:57495963`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798784.1

213 aa

106

213

EF-hand_5

EF-hand_7

EF-hand_8

EF-hand_1

EF-hand_5

PF13202 EF-hand_5 73-94 aa PF13499 EF-hand_7 107-177 aa PF13833 EF-hand_8 122-177 aa PF00036 EF-hand_1 153-178 aa PF13202 EF-hand_5 155-177 aa

XP_057798785.1

213 aa

106

213

EF-hand_5

EF-hand_7

EF-hand_8

EF-hand_1

EF-hand_5

PF13202 EF-hand_5 73-94 aa PF13499 EF-hand_7 107-177 aa PF13833 EF-hand_8 122-177 aa PF00036 EF-hand_1 153-178 aa PF13202 EF-hand_5 155-177 aa

XP_057798786.1

213 aa

106

213

EF-hand_5

EF-hand_7

EF-hand_8

EF-hand_1

EF-hand_5

PF13202 EF-hand_5 73-94 aa PF13499 EF-hand_7 107-177 aa PF13833 EF-hand_8 122-177 aa PF00036 EF-hand_1 153-178 aa PF13202 EF-hand_5 155-177 aa

XP_057798787.1

213 aa

106

213

EF-hand_5

EF-hand_7

EF-hand_8

EF-hand_1

EF-hand_5

PF13202 EF-hand_5 73-94 aa PF13499 EF-hand_7 107-177 aa PF13833 EF-hand_8 122-177 aa PF00036 EF-hand_1 153-178 aa PF13202 EF-hand_5 155-177 aa

XP_057798788.1

213 aa

106

213

EF-hand_5

EF-hand_7

EF-hand_8

EF-hand_1

EF-hand_5

PF13202 EF-hand_5 73-94 aa PF13499 EF-hand_7 107-177 aa PF13833 EF-hand_8 122-177 aa PF00036 EF-hand_1 153-178 aa PF13202 EF-hand_5 155-177 aa

XP_057798789.1

213 aa

106

213

EF-hand_5

EF-hand_7

EF-hand_8

EF-hand_1

EF-hand_5

PF13202 EF-hand_5 73-94 aa PF13499 EF-hand_7 107-177 aa PF13833 EF-hand_8 122-177 aa PF00036 EF-hand_1 153-178 aa PF13202 EF-hand_5 155-177 aa

XP_057798790.1

213 aa

106

213

EF-hand_5

EF-hand_7

EF-hand_8

EF-hand_1

EF-hand_5

PF13202 EF-hand_5 73-94 aa PF13499 EF-hand_7 107-177 aa PF13833 EF-hand_8 122-177 aa PF00036 EF-hand_1 153-178 aa PF13202 EF-hand_5 155-177 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798784.1`	Pfam	`PF13202`	EF-hand_5	Domain	73	94	2.6e-13	49.5	EF hand
`XP_057798784.1`	Pfam	`PF13499`	EF-hand_7	Domain	107	177	2.3e-14	54.2	EF-hand domain pair
`XP_057798784.1`	Pfam	`PF13833`	EF-hand_8	Domain	122	177	9.1e-07	29.2	EF-hand domain pair
`XP_057798784.1`	Pfam	`PF00036`	EF-hand_1	Domain	153	178	3.6e-18	64.4	EF hand domain
`XP_057798784.1`	Pfam	`PF13202`	EF-hand_5	Domain	155	177	2.6e-13	49.5	EF hand
`XP_057798785.1`	Pfam	`PF13202`	EF-hand_5	Domain	73	94	2.6e-13	49.5	EF hand
`XP_057798785.1`	Pfam	`PF13499`	EF-hand_7	Domain	107	177	2.3e-14	54.2	EF-hand domain pair
`XP_057798785.1`	Pfam	`PF13833`	EF-hand_8	Domain	122	177	9.1e-07	29.2	EF-hand domain pair
`XP_057798785.1`	Pfam	`PF00036`	EF-hand_1	Domain	153	178	3.6e-18	64.4	EF hand domain
`XP_057798785.1`	Pfam	`PF13202`	EF-hand_5	Domain	155	177	2.6e-13	49.5	EF hand
`XP_057798786.1`	Pfam	`PF13202`	EF-hand_5	Domain	73	94	2.6e-13	49.5	EF hand
`XP_057798786.1`	Pfam	`PF13499`	EF-hand_7	Domain	107	177	2.3e-14	54.2	EF-hand domain pair
`XP_057798786.1`	Pfam	`PF13833`	EF-hand_8	Domain	122	177	9.1e-07	29.2	EF-hand domain pair
`XP_057798786.1`	Pfam	`PF00036`	EF-hand_1	Domain	153	178	3.6e-18	64.4	EF hand domain
`XP_057798786.1`	Pfam	`PF13202`	EF-hand_5	Domain	155	177	2.6e-13	49.5	EF hand
`XP_057798787.1`	Pfam	`PF13202`	EF-hand_5	Domain	73	94	2.6e-13	49.5	EF hand
`XP_057798787.1`	Pfam	`PF13499`	EF-hand_7	Domain	107	177	2.3e-14	54.2	EF-hand domain pair
`XP_057798787.1`	Pfam	`PF13833`	EF-hand_8	Domain	122	177	9.1e-07	29.2	EF-hand domain pair
`XP_057798787.1`	Pfam	`PF00036`	EF-hand_1	Domain	153	178	3.6e-18	64.4	EF hand domain
`XP_057798787.1`	Pfam	`PF13202`	EF-hand_5	Domain	155	177	2.6e-13	49.5	EF hand
`XP_057798788.1`	Pfam	`PF13202`	EF-hand_5	Domain	73	94	2.6e-13	49.5	EF hand
`XP_057798788.1`	Pfam	`PF13499`	EF-hand_7	Domain	107	177	2.3e-14	54.2	EF-hand domain pair
`XP_057798788.1`	Pfam	`PF13833`	EF-hand_8	Domain	122	177	9.1e-07	29.2	EF-hand domain pair
`XP_057798788.1`	Pfam	`PF00036`	EF-hand_1	Domain	153	178	3.6e-18	64.4	EF hand domain
`XP_057798788.1`	Pfam	`PF13202`	EF-hand_5	Domain	155	177	2.6e-13	49.5	EF hand
`XP_057798789.1`	Pfam	`PF13202`	EF-hand_5	Domain	73	94	2.6e-13	49.5	EF hand
`XP_057798789.1`	Pfam	`PF13499`	EF-hand_7	Domain	107	177	2.3e-14	54.2	EF-hand domain pair
`XP_057798789.1`	Pfam	`PF13833`	EF-hand_8	Domain	122	177	9.1e-07	29.2	EF-hand domain pair
`XP_057798789.1`	Pfam	`PF00036`	EF-hand_1	Domain	153	178	3.6e-18	64.4	EF hand domain
`XP_057798789.1`	Pfam	`PF13202`	EF-hand_5	Domain	155	177	2.6e-13	49.5	EF hand
`XP_057798790.1`	Pfam	`PF13202`	EF-hand_5	Domain	73	94	2.6e-13	49.5	EF hand
`XP_057798790.1`	Pfam	`PF13499`	EF-hand_7	Domain	107	177	2.3e-14	54.2	EF-hand domain pair
`XP_057798790.1`	Pfam	`PF13833`	EF-hand_8	Domain	122	177	9.1e-07	29.2	EF-hand domain pair
`XP_057798790.1`	Pfam	`PF00036`	EF-hand_1	Domain	153	178	3.6e-18	64.4	EF hand domain
`XP_057798790.1`	Pfam	`PF13202`	EF-hand_5	Domain	155	177	2.6e-13	49.5	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057942801.1
AGACGGCCTCACAAAGTAAACGCCTGCATACTCGCAAATCGCGAGTCTTATCTATCACACTACATAAATAAATAGTACATTCAAAACTCGTTAATTAATTTATTATTTTAAATCTTTATTATAAATAGTAGTATTCATACATGCATAAAGAAATCAGATTTGGGTGCAACAAGACAAACGCTTACACCACGGCCTTCTCAATATCCTGCGCTTCGTCGGTGAGGTTATATCAGAAGCCACAATAGCATGAATTTGTATGA...

XM_057942804.1
GACTATCTTCTTCTCTCGGCCACTGCAATTTTATTTTATTTTATTTTATCTTTTCCAACAGAATTTTGGGCGTGGATTGCATCCGTCATTTTCTCAGTGTATTTTTCTTGAGTTTTGTTGTGCATTCTTGACTTGAATTAGTTTCTGGGTTTCTTTTCGTTATGACCCTCTCTATTGGAATGGGAAATGACGGAGAATTTAAAGTGAGGTTATATCAGAAGCCACAATAGCATGAATTTGTATGACAATCGACTAACCCG...

CDS

7 records

下载 CDS FASTA

LOC131014726
ATGGGCTGCTTTCACTCTAAATCTCCAAAACACGCCCCTGGTTATGAGGAGCCCAATATCCTCGCTGCTGAGACACCTTTTTCTGTCAGTGAAGTAGAGGCTTTATACGAACTGTATAAGAAGATAAGTAGCTCCATAATTGACGATGGCCTCATTCATAAGGAAGAATTCCAGCTTGCTCTCTTCAGGAACAGATACAAGAGAAATCTGTTTGCGGACAGGGTATTTGATATTTTTGACTACAAACGCAACGGAGTGAT...

Protein

7 records

下载 Protein FASTA

XP_057798784.1
MGCFHSKSPKHAPGYEEPNILAAETPFSVSEVEALYELYKKISSSIIDDGLIHKEEFQLALFRNRYKRNLFADRVFDIFDYKRNGVIEFGEFVRSLGIFHPNASVAEKVAFAFRVYDLRNTGFIEREELREMVLALLHESDVVLSEEYIEMIVNKTFDEADKKGDGKIDLDEWKEFVSQNPSLIKNMTLPYLKDITLAFPSFVVCSEVEDSDL

XP_057798785.1
MGCFHSKSPKHAPGYEEPNILAAETPFSVSEVEALYELYKKISSSIIDDGLIHKEEFQLALFRNRYKRNLFADRVFDIFDYKRNGVIEFGEFVRSLGIFHPNASVAEKVAFAFRVYDLRNTGFIEREELREMVLALLHESDVVLSEEYIEMIVNKTFDEADKKGDGKIDLDEWKEFVSQNPSLIKNMTLPYLKDITLAFPSFVVCSEVEDSDL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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