当前解析结果
SmilChr03G003840| 统一新 Gene ID | SmilChr03G003840 |
|---|---|
| 名称 | SmilChr03G003840 |
| 描述 | uncharacterized SmilChr03G003840 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 57533764 - 57536082 / + |
| NCBI Gene ID | LOC131019053 |
|---|---|
| GeneID | 131019053 |
| locus_tag | - |
| NCBI Name | LOC131019053 |
| 原始查询 | SmilChr03G003840 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | AT3G01410 (AT3G01410)Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821319] identity=33.6; qcov=0.189; evalue=1.88e-12; confidence=weak |
| Rice | Os04g0191000- identity=28.4; qcov=0.306; evalue=1.17e-19; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00665 (rve); PF13456 (RVT_3); PF17921 (Integrase_H2C2); PF29688 (TnsB_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131019053 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057803718.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057803718.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057803718.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057803718.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057803718.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:57533767 |
C |
T |
EMS_canonical_SNV | stop_gained | 12 | B114,B127,B131,B24,B25,B35,B53,B61,B62,C47,C61,C75 |
Chr3:57533775 |
CT |
C |
1bp_deletion | frameshift_variant | 4 | B13,B139,B87,C72 |
Chr3:57533775 |
CT |
C |
1bp_deletion | CDS_variant | 4 | B13,B139,B87,C72 |
Chr3:57533778 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr3:57533780 |
C |
CA |
1bp_insertion | frameshift_variant | 25 | A1,A4,A5,B117,B129,B138,B23,B55,B60,B72,B77,B89,B91,B94,C3,C36,C55,C57,C60,C67,C70,C73,D11,D7,D8 |
Chr3:57533783 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,B64 |
Chr3:57533785 |
GA |
G |
1bp_deletion | frameshift_variant | 24 | A1,A4,A5,B117,B129,B138,B23,B55,B60,B72,B77,B89,B91,B94,C3,C36,C55,C57,C60,C67,C70,C73,D11,D8 |
Chr3:57533794 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B50,C53,C58,C78 |
Chr3:57533802 |
CTA |
C |
2bp_deletion | frameshift_variant | 3 | A4,B94,C55 |
Chr3:57533802 |
CTA |
C |
2bp_deletion | CDS_variant | 3 | A4,B94,C55 |
Chr3:57533806 |
A |
ATC |
2bp_insertion | frameshift_variant | 2 | B94,C55 |
Chr3:57533806 |
A |
ATC |
2bp_insertion | CDS_variant | 2 | B94,C55 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057803718.1PF00075
RNase_H 308-394 aa
PF13456
RVT_3 312-429 aa
PF17921
Integrase_H2C2 520-576 aa
PF00665
rve 595-691 aa
PF29688
TnsB_C 653-712 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057803718.1 |
Pfam | PF00075 |
RNase_H | Domain | 308 | 394 | 7.6e-09 | 36.6 | RNase H |
XP_057803718.1 |
Pfam | PF13456 |
RVT_3 | Domain | 312 | 429 | 1.6e-18 | 67.5 | Reverse transcriptase-like |
XP_057803718.1 |
Pfam | PF17921 |
Integrase_H2C2 | Domain | 520 | 576 | 3.3e-10 | 40.7 | Integrase zinc binding domain |
XP_057803718.1 |
Pfam | PF00665 |
rve | Domain | 595 | 691 | 1.5e-18 | 67.6 | Integrase core domain |
XP_057803718.1 |
Pfam | PF29688 |
TnsB_C | Domain | 653 | 712 | 1.4e-09 | 38.6 | TnsB C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。