当前解析结果
SmilChr03G003854| 统一新 Gene ID | SmilChr03G003854 |
|---|---|
| 名称 | SmilChr03G003854 |
| 描述 | uncharacterized SmilChr03G003854 |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 57640631 - 57645839 / - |
| NCBI Gene ID | LOC131014705 |
|---|---|
| GeneID | 131014705 |
| locus_tag | - |
| NCBI Name | LOC131014705 |
| 原始查询 | SmilChr03G003854 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835385]; symbol=AT5G53050; hit=AT5G53050; species=arabidopsis; confidence=high |
| 产物 | alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835385]; symbol=AT5G53050; hit=AT5G53050; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G53050 (AT5G53050)alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835385] identity=65.8; qcov=1.01; evalue=7.33e-178; confidence=high |
| Rice | Os05g0542200- identity=59; qcov=1.03; evalue=2.15e-173; confidence=high |
| GO | GO:0003824 (catalytic activity) |
| KEGG | - |
| Pfam | PF00561 (Abhydrolase_1); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014705 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.20000 | XP_057798744.1 |
| 2 | Mitochondrion | 线粒体 | 0.20000 | XP_057798744.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057798744.1 |
| 4 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057798744.1 |
| 5 | Lipid droplet | 脂滴 | 0.20000 | XP_057798744.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:57641103 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B68,B95,B97,C44,C48 |
Chr3:57641196 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B122,B37,C36,C49 |
Chr3:57642664 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B123,B14,B49 |
Chr3:57642851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr3:57642915 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr3:57642922 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C28,C75 |
Chr3:57643442 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A13,B134,B34,B9 |
Chr3:57643481 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,B101,C38 |
Chr3:57644212 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr3:57644647 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:57645598 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B90,B92,D3,D4 |
Chr3:57645663 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A9,B56,B96,C50,C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798744.1PF00561
Abhydrolase_1 37-301 aa
PF12697
Abhydrolase_6 77-307 aa
PF12146
Hydrolase_4 79-185 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798744.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 37 | 301 | 1.2e-27 | 97.9 | alpha/beta hydrolase fold |
XP_057798744.1 |
Pfam | PF12697 |
Abhydrolase_6 | Domain | 77 | 307 | 2.4e-10 | 42.1 | Alpha/beta hydrolase family |
XP_057798744.1 |
Pfam | PF12146 |
Hydrolase_4 | Domain | 79 | 185 | 2.8e-12 | 47.2 | Serine aminopeptidase, S33 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。