Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003861`

染色体: Chr03 坐标: 57696371-57699719 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003861`
名称	SmilChr03G003861
描述	luminal-binding protein 5
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	57696371 - 57699719 / `+`

ID 对照

NCBI Gene ID	`LOC131014690`
GeneID	`131014690`
locus_tag	`-`
NCBI Name	`LOC131014690`
原始查询	`SmilChr03G003861`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	luminal-binding protein 5
产物	luminal-binding protein 5
Arabidopsis	`AT5G42020` (BIP2) Heat shock protein 70 (Hsp 70) family protein [Source:NCBI gene (formerly Entrezgene);Acc:834207] identity=89.8; qcov=0.997; evalue=0; confidence=high
Rice	`Os02g0115900` (OsBiP1) heat shock 70 kDa protein BIP1-like [Source:NCBI gene (formerly Entrezgene);Acc:4328075] identity=87.6; qcov=0.998; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005788 (endoplasmic reticulum lumen); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0030433 (GO:0030433); GO:0030968 (endoplasmic reticulum unfolded protein response); GO:0031072 (heat shock protein binding); GO:0034620 (cellular response to unfolded protein); GO:0034663 (endoplasmic reticulum chaperone complex); GO:0042026 (protein refolding); GO:0051082 (GO:0051082); GO:0051085 (GO:0051085); GO:0051787 (misfolded protein binding); GO:0140662 (ATP-dependent protein folding chaperone)
KEGG	smil03060 (Protein export - Salvia miltiorrhiza (redroot sage)); smil04141 (Protein processing in endoplasmic reticulum - Salvia miltiorrhiza (redroot sage))
Pfam	PF00012 (HSP70); PF06723 (MreB_Mbl)
InterPro	-
eggNOG	-
NR	GeneID:131014690

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057798726.1`
2	Endoplasmic reticulum lumen	内质网腔	1.00000	`XP_057798726.1`
3	Melanosome	Melanosome	0.20000	`XP_057798726.1`
4	Nucleus	细胞核	0.00000	`XP_057798726.1`
5	Chromosome	染色体	0.00000	`XP_057798726.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:57696474`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B105,B112,B93
`Chr3:57696481`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr3:57696492`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr3:57696493`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr3:57696503`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A6
`Chr3:57696508`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B1,B23,B7,C1
`Chr3:57697041`	`G`	`GT`	1bp_insertion	frameshift_variant	68	A10,A13,A14,A15,A16,A18,A19,A2,A21,A4,A5,A7,B106,B113,B114,B12,B120,B125,B130,B134,B135,B136,B138,B15,B17,B25,B26,B29,B3,B30,B31,B34,B45,B48,B59,B66,B67,B71,B72,B73,B80,B81,B83,B88,B90,B92,C15,C17,C22,C24,C26,C34,C37,C40,C52,C53,C55,C59,C6,C62,C74,C76,C86,C87,D11,D2,D5,D7
`Chr3:57697215`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr3:57697225`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B69,B90,B92,D4
`Chr3:57697247`	`C`	`T`	EMS_canonical_SNV	stop_gained	83	A1,A19,A2,A21,A22,A24,A6,A8,B100,B101,B103,B108,B111,B112,B113,B114,B126,B127,B13,B134,B135,B137,B14,B140,B16,B18,B2,B20,B21,B22,B24,B26,B30,B35,B42,B44,B47,B5,B50,B51,B52,B55,B56,B58,B59,B61,B66,B68,B73,B74,B75,B76,B8,B83,B86,B89,B91,B95,B96,B97,C10,C19,C20,C21,C24,C26,C27,C30,C33,C38,C40,C43,C47,C55,C58,C59,C60,C62,C70,C74,C78,C81,D8
`Chr3:57697254`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr3:57697272`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798726.1

662 aa

331

662

HSP70

MreB_Mbl

PF00012 HSP70 38-645 aa PF06723 MreB_Mbl 154-405 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798726.1`	Pfam	`PF00012`	HSP70	Family	38	645	4.6e-264	877.9	Hsp70 protein
`XP_057798726.1`	Pfam	`PF06723`	MreB_Mbl	Family	154	405	1.1e-16	61.4	MreB/Mbl protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057942743.1
CGCTTCTTCAGATTCGTAACTACAAACAGAAAAGGAAAAACAAACGGAGCAAATAGGTGAAAGGCGAACTGTACTTGTAGATTGTTGAGCTTCGCAGCAATGGCTGGTGCGTGGGAGCGACGCGCATCCTCTGTCGTCTTCGCCTTCGTTCTGATCGGCTGTTTTTTCGCATTTTCGATAGCCAAAGAGGAGGCTACCAAACTCGGGACAGTTATTGGGATAGACCTGGGTACAACTTATTCATGCGTTGGGGTTTACAA...

CDS

1 records

下载 CDS FASTA

LOC131014690
ATGGCTGGTGCGTGGGAGCGACGCGCATCCTCTGTCGTCTTCGCCTTCGTTCTGATCGGCTGTTTTTTCGCATTTTCGATAGCCAAAGAGGAGGCTACCAAACTCGGGACAGTTATTGGGATAGACCTGGGTACAACTTATTCATGCGTTGGGGTTTACAAAAACGGACATGTTGAAATTATAGCAAACGATCAAGGTAACCGCATCACCCCATCATGGGTTGCGTTCACCGACAGTGAGAGGTTGATTGGTGAGGCTGC...

Protein

1 records

下载 Protein FASTA

XP_057798726.1
MAGAWERRASSVVFAFVLIGCFFAFSIAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFEDKEVQRDMKLVPYKIVNKDGKPYIEVNVKDGEKKVFSPEEISAMILVKMKETAEAYLGKKVKDVVVTVPAYFNDAQRQATKDAGTIAGLNVARIINEPTAAAFAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器