Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003862`

染色体: Chr03 坐标: 57699908-57703617 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003862`
名称	SmilChr03G003862
描述	acyl-CoA-binding domain-containing protein 1
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	57699908 - 57703617 / `-`

ID 对照

NCBI Gene ID	`LOC131014715`
GeneID	`131014715`
locus_tag	`-`
NCBI Name	`LOC131014715`
原始查询	`SmilChr03G003862`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	acyl-CoA-binding domain-containing protein 1
产物	acyl-CoA-binding domain-containing protein 1
Arabidopsis	`AT5G53470` (ACBP1) acyl-CoA binding protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:835428] identity=62.4; qcov=0.972; evalue=1.7e-141; confidence=high
Rice	`Os04g0681900` (OsACBP4) - identity=51.4; qcov=0.986; evalue=8.12e-114; confidence=high
GO	GO:0000062 (fatty-acyl-CoA binding); GO:0005515 (protein binding)
KEGG	-
Pfam	PF00023 (Ank); PF00887 (ACBP); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:131014715

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.60000	`XP_057798765.1`
2	Cytosol	细胞质基质	0.20000	`XP_057798765.1`
3	Chloroplast membrane	叶绿体膜	0.20000	`XP_057798765.1`
4	Nucleus	细胞核	0.00000	`XP_057798765.1`
5	Chromosome	染色体	0.00000	`XP_057798765.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:57700910`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B104,C81,D11
`Chr3:57703008`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B15,C2,C33,C43
`Chr3:57703023`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B15,C2,C33,C43
`Chr3:57703028`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B15,C2,C33,C43
`Chr3:57703039`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B15,B28,C2,C33
`Chr3:57703349`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A5,B32,C47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798765.1

354 aa

177

354

ACBP

Ank_4

Ank_2

Ank_5

Ank_3

Ank

Ank_4

Ank_5

Ank_3

Ank

PF00887 ACBP 101-180 aa PF13637 Ank_4 237-286 aa PF12796 Ank_2 238-329 aa PF13857 Ank_5 256-306 aa PF13606 Ank_3 265-294 aa PF00023 Ank 266-296 aa PF13637 Ank_4 271-319 aa PF13857 Ank_5 285-339 aa PF13606 Ank_3 298-326 aa PF00023 Ank 299-330 aa

XP_057798766.1

353 aa

176

353

ACBP

Ank_4

Ank_2

Ank_5

Ank_3

Ank

Ank_4

Ank_5

Ank_3

Ank

PF00887 ACBP 101-180 aa PF13637 Ank_4 236-285 aa PF12796 Ank_2 237-328 aa PF13857 Ank_5 255-305 aa PF13606 Ank_3 264-293 aa PF00023 Ank 265-295 aa PF13637 Ank_4 270-318 aa PF13857 Ank_5 284-338 aa PF13606 Ank_3 297-325 aa PF00023 Ank 298-329 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798765.1`	Pfam	`PF00887`	ACBP	Domain	101	180	8.9e-27	93.8	Acyl CoA binding protein
`XP_057798765.1`	Pfam	`PF13637`	Ank_4	Repeat	237	286	2.3e-17	63.4	Ankyrin repeats (many copies)
`XP_057798765.1`	Pfam	`PF12796`	Ank_2	Repeat	238	329	2.2e-19	70.5	Ankyrin repeats (3 copies)
`XP_057798765.1`	Pfam	`PF13857`	Ank_5	Repeat	256	306	2.8e-22	79.3	Ankyrin repeats (many copies)
`XP_057798765.1`	Pfam	`PF13606`	Ank_3	Repeat	265	294	3.3e-14	52.2	Ankyrin repeat
`XP_057798765.1`	Pfam	`PF00023`	Ank	Repeat	266	296	4e-20	71.5	Ankyrin repeat
`XP_057798765.1`	Pfam	`PF13637`	Ank_4	Repeat	271	319	2.3e-17	63.4	Ankyrin repeats (many copies)
`XP_057798765.1`	Pfam	`PF13857`	Ank_5	Repeat	285	339	2.8e-22	79.3	Ankyrin repeats (many copies)
`XP_057798765.1`	Pfam	`PF13606`	Ank_3	Repeat	298	326	3.3e-14	52.2	Ankyrin repeat
`XP_057798765.1`	Pfam	`PF00023`	Ank	Repeat	299	330	4e-20	71.5	Ankyrin repeat
`XP_057798766.1`	Pfam	`PF00887`	ACBP	Domain	101	180	8.9e-27	93.8	Acyl CoA binding protein
`XP_057798766.1`	Pfam	`PF13637`	Ank_4	Repeat	236	285	2.3e-17	63.4	Ankyrin repeats (many copies)
`XP_057798766.1`	Pfam	`PF12796`	Ank_2	Repeat	237	328	2.2e-19	70.5	Ankyrin repeats (3 copies)
`XP_057798766.1`	Pfam	`PF13857`	Ank_5	Repeat	255	305	2.7e-22	79.3	Ankyrin repeats (many copies)
`XP_057798766.1`	Pfam	`PF13606`	Ank_3	Repeat	264	293	3.2e-14	52.2	Ankyrin repeat
`XP_057798766.1`	Pfam	`PF00023`	Ank	Repeat	265	295	3.9e-20	71.5	Ankyrin repeat
`XP_057798766.1`	Pfam	`PF13637`	Ank_4	Repeat	270	318	2.3e-17	63.4	Ankyrin repeats (many copies)
`XP_057798766.1`	Pfam	`PF13857`	Ank_5	Repeat	284	338	2.7e-22	79.3	Ankyrin repeats (many copies)
`XP_057798766.1`	Pfam	`PF13606`	Ank_3	Repeat	297	325	3.2e-14	52.2	Ankyrin repeat
`XP_057798766.1`	Pfam	`PF00023`	Ank	Repeat	298	329	3.9e-20	71.5	Ankyrin repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942782.1
CTGCAAAGAACTGCAGGAAGAAAGCTGCAGGCAATAGACAATAGCAGTCGAGCTGGAAACAGTTACTTGGGCTTTGCCGCCGCCACTTACATAATTTTCACTTCATTTATTGCACTGAGGGGAAATATAGCACAAATCTCAGAAATTCCACTTCCCCTGTTTCTAGGGTTTTGCTTTTCTCGCTATTCACGAAACCTATATTCATCCCTGGGCAATTTCATAATTTTCTCTTCATTTGGGAGGTTCATCGGGAATTGATG...

XM_057942783.1
GAACTGCAGGAAGAAAGCTGCAGGCAATAGACAATAGCAGTCGAGCTGGAAACAGTTACTTGGGCTTTGCCGCCGCCACTTACATAATTTTCACTTCATTTATTGCACTGAGGGGAAATATAGCACAAATCTCAGAAATTCCACTTCCCCTGTTTCTAGGGTTTTGCTTTTCTCGCTATTCACGAAACCTATATTCATCCCTGGGCAATTTCATAATTTTCTCTTCATTTGGGAGGTTCATCGGGAATTGATGGCGGCGG...

CDS

2 records

下载 CDS FASTA

LOC131014715
ATGGCGGCGGAGTGGCACCAATTCCTTCAATCGGTGTTGTTGGGAGTCATCTTCTCGTACCTACTCGCGAAGCTATTCTCTGTTATATTCGCCTTCCGCGACGAGAATCTGAGGATCACGCGCGCTGATTCCCTCGAACCTGAAGCTGAAGAGAGAGCCGCAGATTCTCCGGCTCGGAATTCGGATGAGAATGAGCCGTTGATCCGTGGAGGTGCGGTATCGGGGAATGAAAGCGTGGTGACGAGTGATCATAGTGATAG...

Protein

2 records

下载 Protein FASTA

XP_057798765.1
MAAEWHQFLQSVLLGVIFSYLLAKLFSVIFAFRDENLRITRADSLEPEAEERAADSPARNSDENEPLIRGGAVSGNESVVTSDHSDSDDDWEGVESTELDEIFSAATAFVAATAADRSAMKVSNDVQLQLYSLYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIDIVSELYPTWASGLATQQQKKKDESTSDTSMGGAGGPMGPVFSTFVYEEESGTDLKLDAIHAFAREGDEGNLVKCIESDVPLN...

XP_057798766.1
MAAEWHQFLQSVLLGVIFSYLLAKLFSVIFAFRDENLRITRADSLEPEAEERAADSPARNSDENEPLIRGGAVSGNESVVTSDHSDSDDDWEGVESTELDEIFSAATAFVAATAADRSAMKVSNDVQLQLYSLYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMEKYIDIVSELYPTWASGLATQQKKKDESTSDTSMGGAGGPMGPVFSTFVYEEESGTDLKLDAIHAFAREGDEGNLVKCIESDVPLNL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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