Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003871`

染色体: Chr03 坐标: 57804682-57806999 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003871`
名称	SmilChr03G003871
描述	uncharacterized SmilChr03G003871
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	57804682 - 57806999 / `-`

ID 对照

NCBI Gene ID	`LOC131014721`
GeneID	`131014721`
locus_tag	`-`
NCBI Name	`LOC131014721`
原始查询	`SmilChr03G003871`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	binding protein [Source:NCBI gene (formerly Entrezgene);Acc:828889]; symbol=ISI1; hit=AT4G27750; species=arabidopsis; confidence=high
产物	binding protein [Source:NCBI gene (formerly Entrezgene);Acc:828889]; symbol=ISI1; hit=AT4G27750; species=arabidopsis; confidence=high
Arabidopsis	`AT4G27750` (ISI1) binding protein [Source:NCBI gene (formerly Entrezgene);Acc:828889] identity=68.2; qcov=1.04; evalue=5.37e-155; confidence=high
Rice	`Os06g0129300` (OsISI1) - identity=64.8; qcov=0.925; evalue=1.39e-122; confidence=high
GO	-
KEGG	-
Pfam	PF08045 (CDC14)
InterPro	-
eggNOG	-
NR	GeneID:131014721

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057798775.1`
2	Cytosol	细胞质基质	0.80000	`XP_057798775.1`
3	Nucleus	细胞核	0.00000	`XP_057798775.1`
4	Chromosome	染色体	0.00000	`XP_057798775.1`
5	Centromere	着丝粒	0.00000	`XP_057798775.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:57804791`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B127,B95,C7,C71,D6
`Chr3:57804879`	`C`	`T`	EMS_canonical_SNV	stop_gained	14	A19,A3,B121,B20,B48,B72,B79,C15,C16,C52,C55,C81,C85,D2
`Chr3:57804889`	`A`	`AT`	1bp_insertion	frameshift_variant	2	B48,C16
`Chr3:57804889`	`A`	`AT`	1bp_insertion	CDS_variant	2	B48,C16
`Chr3:57804923`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C11,C39,C69
`Chr3:57805330`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,B55,D1
`Chr3:57805333`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B6,C34
`Chr3:57805807`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B55,D1
`Chr3:57805808`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B112,B117,C7
`Chr3:57806332`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B131,B75,C64
`Chr3:57806478`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798775.1

292 aa

146

292

CDC14

PF08045 CDC14 122-227 aa

XP_057798776.1

292 aa

146

292

CDC14

PF08045 CDC14 122-227 aa

XP_057798777.1

292 aa

146

292

CDC14

PF08045 CDC14 122-227 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798775.1`	Pfam	`PF08045`	CDC14	Family	122	227	1.3e-13	51.4	Cell division control protein 14, SIN component
`XP_057798776.1`	Pfam	`PF08045`	CDC14	Family	122	227	1.3e-13	51.4	Cell division control protein 14, SIN component
`XP_057798777.1`	Pfam	`PF08045`	CDC14	Family	122	227	1.3e-13	51.4	Cell division control protein 14, SIN component

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057942794.1
CTTCTATAAAAAGAAATACTTCTCTTAAAACAACACTGTTTTACAACTCTTTCCCAATCCATACCTTTCAATTGTTTTTATTTTTTACTATGCTCGTATTTCGCTCTTGATCCACCGCTGTCTTCTTCAGATCCTTGGATTTTCCCGTTGGGATTCTCATTTCTCGACTGAAAGCTTGCGCGTGTTGTGGTGCTGATTTCGGGATGTACCTGAAGAAGGCGTTTTGGAGCGAGGCCGTGAAGGCGGACGCGGAACAGCAG...

XM_057942793.1
ATACTTCTCTTAAAACAACACTGTTTTACAACTCTTTCCCAATCCATACCTTTCAATTGTTTTTATTTTTTACTATGCTCGTATTTCGCTCTTGATCCACCGCTGTCTTCTTCAGATCCTTGGATTTTCCCGTTGGGATTCTCATTTCTCGACTGAAAGCTTGCGCGTGTTGTGGTGCTGATTTCGGGGTAATCATCTTATTATCTTGAAGATGAAGAATTTCCTGTCTTTTTGATGTACCTGAAGAAGGCGTTTTGGAG...

CDS

3 records

下载 CDS FASTA

LOC131014721
ATGTACCTGAAGAAGGCGTTTTGGAGCGAGGCCGTGAAGGCGGACGCGGAACAGCAGTCGCCGGTTGTGGAGCTGGTGAAATCGCTGGACAAGCAGCGGCTGTATCGCGAGGTCACCCTCGCCCTCCGCACCGGCTTACGCGAGGCACGAGCAGAGTTCTCCTTCCTCCGAATCCGCGGACTCCGCAGCATTCTCAAGTTCCTCCGATCCCTTGCTCAATCCGATGACACCATCAATCTCTTTTGCCACTCCCAATCCAT...

Protein

3 records

下载 Protein FASTA

XP_057798775.1
MYLKKAFWSEAVKADAEQQSPVVELVKSLDKQRLYREVTLALRTGLREARAEFSFLRIRGLRSILKFLRSLAQSDDTINLFCHSQSIPALQVVPVLFQHSLKDVEDQSVTNLDHIFSVEPMKISSPATDAEVAVALRVLEGCCLLHRESTILAHQHKAITVLMNILSTRGVVEQGACLDALVAIMLDSSSNQMDFEACNGIEEVALLIKDTQVEENLRLKCGEFLLLLIGHVNGRETPPMMTIHDEIRQYLGEKSASLIW...

XP_057798776.1
MYLKKAFWSEAVKADAEQQSPVVELVKSLDKQRLYREVTLALRTGLREARAEFSFLRIRGLRSILKFLRSLAQSDDTINLFCHSQSIPALQVVPVLFQHSLKDVEDQSVTNLDHIFSVEPMKISSPATDAEVAVALRVLEGCCLLHRESTILAHQHKAITVLMNILSTRGVVEQGACLDALVAIMLDSSSNQMDFEACNGIEEVALLIKDTQVEENLRLKCGEFLLLLIGHVNGRETPPMMTIHDEIRQYLGEKSASLIW...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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