Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003877`

染色体: Chr03 坐标: 57881016-57883408 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003877`
名称	SmilChr03G003877
描述	rhodanese-like domain-containing protein 14, chloroplastic
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	57881016 - 57883408 / `+`

ID 对照

NCBI Gene ID	`LOC131014722`
GeneID	`131014722`
locus_tag	`-`
NCBI Name	`LOC131014722`
原始查询	`SmilChr03G003877`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	rhodanese-like domain-containing protein 14, chloroplastic
产物	rhodanese-like domain-containing protein 14%2C chloroplastic
Arabidopsis	`AT4G27700` (AT4G27700) Rhodanese/Cell cycle control phosphatase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828884] identity=67.5; qcov=1.02; evalue=9.63e-107; confidence=high
Rice	`Os09g0530000` (OsStr4) - identity=83.3; qcov=0.783; evalue=4.19e-111; confidence=high
GO	GO:0009507 (chloroplast)
KEGG	-
Pfam	PF00581 (Rhodanese)
InterPro	-
eggNOG	-
NR	GeneID:131014722

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057798778.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057798778.1`
3	Nucleus	细胞核	0.00000	`XP_057798778.1`
4	Chromosome	染色体	0.00000	`XP_057798778.1`
5	Centromere	着丝粒	0.00000	`XP_057798778.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:57882397`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B130,B67
`Chr3:57882450`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B22
`Chr3:57882555`	`ATC`	`A`	2bp_deletion	frameshift_variant	1	B22
`Chr3:57882555`	`ATC`	`A`	2bp_deletion	CDS_variant	1	B22
`Chr3:57882623`	`C`	`T`	EMS_canonical_SNV	stop_gained	84	A1,A10,A11,A14,A15,A20,A24,A3,A7,B10,B102,B105,B111,B119,B12,B122,B124,B125,B129,B132,B133,B136,B139,B140,B19,B2,B20,B22,B26,B29,B31,B35,B37,B48,B51,B52,B55,B56,B59,B6,B62,B63,B65,B66,B68,B7,B71,B74,B75,B78,B79,B89,B9,B96,B98,B99,C11,C30,C33,C34,C36,C39,C45,C49,C52,C53,C54,C58,C6,C60,C61,C67,C69,C70,C73,C75,C80,C81,D1,D11,D2,D3,D4,D7
`Chr3:57882659`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C44
`Chr3:57882739`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B22

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798778.1

274 aa

137

274

Rhodanese

PF00581 Rhodanese 87-121 aa PF00581 Rhodanese 206-265 aa

XP_057798779.1

230 aa

115

230

Rhodanese

PF00581 Rhodanese 87-221 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798778.1`	Pfam	`PF00581`	Rhodanese	Domain	87	121	1.4e-14	55.1	Rhodanese-like domain
`XP_057798778.1`	Pfam	`PF00581`	Rhodanese	Domain	206	265	1.4e-14	55.1	Rhodanese-like domain
`XP_057798779.1`	Pfam	`PF00581`	Rhodanese	Domain	87	221	1.6e-15	58.1	Rhodanese-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942796.1
CACACGTATAGGAGAGAGAGAGAGAGAGAGAATGGCGACTTATTATCCTAAAGCAGGAAAACAACAAATGATAAGAGATTTAGAAAATCCCAAGTAGAAGGAAATCTTCGCACTACCACCACAAATGTAGATTGTGAGCACGCTATAATATCTAGCGTTTCCCATTAATTGGCCCACCAATTTCCTCTATTTCAAATGTTTCAAGCATTTAAACATAGAAAATCCAGATCAAATCAATGAATCAAGCGACTTTAATATCA...

XM_057942795.1
AGGAAATCTTCGCACTACCACCACAAATGTAGATTGTGAGCACGCTATAATATCTAGCGTTTCCCATTAATTGGCCCACCAATTTCCTCTATTTCAAATGTTTCAAGCATTTAAACATAGAAAATCCAGATCAAATCAATGAATCAAGCGACTTTAATATCAACCAAAGAGACAGATATCATCTAAACCTTAGGAAAGCAAATAAAAATCTTCTGCAAATTACAGCACCAATATCCAGTTTTGGGCTAGGAAAATGGTTG...

CDS

2 records

下载 CDS FASTA

LOC131014722
ATGGTTGCTGCATTTACTTCCATCAGCCCACACCCATCATTTTCGTCTCTATATCACAAGTTTCACCCTTCTCTTCTAGCCTATAGTTTGAACTCAAGCATTGAATCTACTAACTTATCCAACAGAGGGAGAAACTCAAGCACCTATGGACCCTTGAGAATTCAAAATGCAGCAACCAAGCCGGCAAAGTCGCCAGCTGAAGAAGACTGGAAGACAAAACGGCAAGTTCTGCTGGAGAAAAAGGTAAGAAGTGTTGATGT...

Protein

2 records

下载 Protein FASTA

XP_057798778.1
MVAAFTSISPHPSFSSLYHKFHPSLLAYSLNSSIESTNLSNRGRNSSTYGPLRIQNAATKPAKSPAEEDWKTKRQVLLEKKVRSVDVKEALRLQKENNFVILDVRPEAEFKEAHPAGAINVQIYRLIKEWTAWDIARRAAFAFFGIFQGTEENPEFIQSKICRMLYSSTLVPLNLSLCLGSCSCSFSCQPQNHLLSRQLAQSGVESKLDKDAKIIVACSAGGTTRPTQNLPEGQQSRSFIAAYLLVLNGYKNVYHLDGGI...

XP_057798779.1
MVAAFTSISPHPSFSSLYHKFHPSLLAYSLNSSIESTNLSNRGRNSSTYGPLRIQNAATKPAKSPAEEDWKTKRQVLLEKKVRSVDVKEALRLQKENNFVILDVRPEAEFKEAHPAGAINVQIYRLIKEWTAWDIARRAAFAFFGIFQGTEENPEFIQSVESKLDKDAKIIVACSAGGTTRPTQNLPEGQQSRSFIAAYLLVLNGYKNVYHLDGGIYQWFKEGLPSESEE

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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