Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G003878

染色体: Chr03 坐标: 57883768-57887557 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G003878
名称SmilChr03G003878
描述uncharacterized SmilChr03G003878
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向57883768 - 57887557 / -

ID 对照

NCBI Gene IDLOC131014714
GeneID131014714
locus_tag-
NCBI NameLOC131014714
原始查询SmilChr03G003878

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述Metal-dependent protein hydrolase [Source:NCBI gene (formerly Entrezgene);Acc:834202]; symbol=AT5G41970; hit=AT5G41970; species=arabidopsis; confidence=high
产物Metal-dependent protein hydrolase [Source:NCBI gene (formerly Entrezgene);Acc:834202]; symbol=AT5G41970; hit=AT5G41970; species=arabidopsis; confidence=high
ArabidopsisAT5G41970 (AT5G41970)
Metal-dependent protein hydrolase [Source:NCBI gene (formerly Entrezgene);Acc:834202]
identity=67; qcov=0.928; evalue=3.31e-174; confidence=high
RiceOs02g0686600
-
identity=66.4; qcov=0.912; evalue=9.27e-165; confidence=high
GOGO:0005634 (nucleus); GO:0005737 (cytoplasm)
KEGG-
PfamPF03690 (MYG1_exonuc)
InterPro-
eggNOG-
NRGeneID:131014714

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057798763.1
2 Chloroplast 叶绿体 0.60000 XP_057798763.1
3 Mitochondrion matrix 线粒体基质 0.20000 XP_057798763.1
4 Nucleus 细胞核 0.00000 XP_057798763.1
5 Chromosome 染色体 0.00000 XP_057798763.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:57886897 CT C 1bp_deletion frameshift_variant 8 A3,B29,B52,B71,B75,C45,C53,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057798763.1
363 aa
N
1
182
363
MYG1_exonuc
C
PF03690 MYG1_exonuc 41-360 aa
XP_057798764.1
362 aa
N
1
181
362
MYG1_exonuc
C
PF03690 MYG1_exonuc 41-359 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057798763.1 Pfam PF03690 MYG1_exonuc Family 41 360 1.6e-129 432.8 Uncharacterised protein family (UPF0160)
XP_057798764.1 Pfam PF03690 MYG1_exonuc Family 41 359 2.5e-131 438.7 Uncharacterised protein family (UPF0160)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057942781.1
TTGGAAAACAAATATATACTGATAAAAATAAAATACTAGTAGTAGTCAATAATACTAGAATCGAGTTTAAATAATTTCATAATTATGTAGACTTATACGTATTGTCGCACGAAAAATGCAAACATTTCACATTTGAAAACACTCAGAAAGCGCGCCACGGTCTGAGCTCACAGCAGCAACCAGAAGCCTACGATGAAATTTGTGTCCATTTCATCCGGCGTCGCGTTACAACGACGCGCCGCCACGGCAGTTTCAAACTA...
XM_057942780.1
GTTTAAATAATTTCATAATTATGTAGACTTATACGTATTGTCGCACGAAAAATGCAAACATTTCACATTTGAAAACACTCAGAAAGCGCGCCACGGTCTGAGCTCACAGCAGCAACCAGAAGCCTACGATGAAATTTGTGTCCATTTCATCCGGCGTCGCGTTACAACGACGCGCCGCCACGGCAGTTTCAAACTATATCCTCAGCTGCGGGTGGCGCAGCCTATCCTCGTCCGCCGCCCCAAAGAGAGTCGGCACCCAT...

CDS

2 records

下载 CDS FASTA
LOC131014714
ATGAAATTTGTGTCCATTTCATCCGGCGTCGCGTTACAACGACGCGCCGCCACGGCAGTTTCAAACTATATCCTCAGCTGCGGGTGGCGCAGCCTATCCTCGTCCGCCGCCCCAAAGAGAGTCGGCACCCATGACGGCAAATTCCACTGCGATGAAGCGCTTGGCTGCTTCATGATCCGTCGCACCACTAAATTCTACAACGCCGACATCGTGCGCTCTCGCGATCCCATGGTTTTGGATAAGCTCGACGCCGTGCTGGA...
LOC131014714
ATGAAATTTGTGTCCATTTCATCCGGCGTCGCGTTACAACGACGCGCCGCCACGGCAGTTTCAAACTATATCCTCAGCTGCGGGTGGCGCAGCCTATCCTCGTCCGCCGCCCCAAAGAGAGTCGGCACCCATGACGGCAAATTCCACTGCGATGAAGCGCTTGGCTGCTTCATGATCCGTCGCACCACTAAATTCTACAACGCCGACATCGTGCGCTCTCGCGATCCCATGGTTTTGGATAAGCTCGACGCCGTGCTGGA...

Protein

2 records

下载 Protein FASTA
XP_057798763.1
MKFVSISSGVALQRRAATAVSNYILSCGWRSLSSSAAPKRVGTHDGKFHCDEALGCFMIRRTTKFYNADIVRSRDPMVLDKLDAVLDVGGVYDPSRDRYDHHQKGFEEVFGFGYLTKLSSAGLVYKHYGKEIIAKEVQLDSDHPDVHRLFFTVYKNFIEQAVDAVDNGISQYNTTQLPRFVNNTSLSSRVERLNLDWINQNQSPAEEDASFQQAMEVAGKEFLECINFHAKSWLPARSVVMNSLLARKSIDSSGEIIVLT...
XP_057798764.1
MKFVSISSGVALQRRAATAVSNYILSCGWRSLSSSAAPKRVGTHDGKFHCDEALGCFMIRRTTKFYNADIVRSRDPMVLDKLDAVLDVGGVYDPSRDRYDHHQKGFEEVFGFGYLTKLSSAGLVYKHYGKEIIAKEVQLDSDHPDVHRLFFTVYKNFIEAVDAVDNGISQYNTTQLPRFVNNTSLSSRVERLNLDWINQNQSPAEEDASFQQAMEVAGKEFLECINFHAKSWLPARSVVMNSLLARKSIDSSGEIIVLTN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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