Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003879`

染色体: Chr03 坐标: 57889053-57893536 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003879`
名称	SmilChr03G003879
描述	vacuolar protein sorting-associated protein 26A-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	57889053 - 57893536 / `-`

ID 对照

NCBI Gene ID	`LOC131014719`
GeneID	`131014719`
locus_tag	`-`
NCBI Name	`LOC131014719`
原始查询	`SmilChr03G003879`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	vacuolar protein sorting-associated protein 26A-like
产物	vacuolar protein sorting-associated protein 26A-like
Arabidopsis	`AT4G27690` (VPS26B) vacuolar protein sorting 26B [Source:NCBI gene (formerly Entrezgene);Acc:828883] identity=83.1; qcov=1; evalue=0; confidence=high
Rice	`Os12g0500700` - identity=76.2; qcov=1; evalue=8.88e-177; confidence=high
GO	GO:0005768 (endosome); GO:0006886 (intracellular protein transport); GO:0030904 (retromer complex); GO:0042147 (retrograde transport, endosome to Golgi)
KEGG	smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04144 (Endocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF03643 (Vps26)
InterPro	-
eggNOG	-
NR	GeneID:131014719

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057798771.1`
2	Vacuole	液泡	0.60000	`XP_057798771.1`
3	Vacuole membrane	液泡膜	0.40000	`XP_057798771.1`
4	Endosome	内体	0.40000	`XP_057798771.1`
5	Endosome membrane	内体膜	0.40000	`XP_057798771.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:57889427`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B38
`Chr3:57889967`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr3:57890624`	`A`	`AGG`	2bp_insertion	frameshift_variant	1	B90
`Chr3:57890624`	`A`	`AGG`	2bp_insertion	CDS_variant	1	B90
`Chr3:57891123`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B105,B51
`Chr3:57891551`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C32,C68
`Chr3:57892140`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A16,B100,B76,C28,C75

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798771.1

301 aa

150

301

Vps26

PF03643 Vps26 8-283 aa

XP_057798772.1

301 aa

150

301

Vps26

PF03643 Vps26 8-283 aa

XP_057798773.1

301 aa

150

301

Vps26

PF03643 Vps26 8-283 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798771.1`	Pfam	`PF03643`	Vps26	Family	8	283	7.3e-128	426.0	Vacuolar protein sorting-associated protein 26
`XP_057798772.1`	Pfam	`PF03643`	Vps26	Family	8	283	7.3e-128	426.0	Vacuolar protein sorting-associated protein 26
`XP_057798773.1`	Pfam	`PF03643`	Vps26	Family	8	283	7.3e-128	426.0	Vacuolar protein sorting-associated protein 26

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057942788.1
GAATTATAGTGGGTTGTACATGGATATATTTATTAAAGTTAAAAATAGAGATGAATTTCGTAGATGGACGGAAATGAAAATATGAAGATGTTTTTGATGGATGGAAGGAGCATTATATAGATGTTTGGATTTTGTATTTGACAACAAGGATTATTTCATATTTCTATTACCTTAGTTCCCTCCATCCAAACACAGTCTAACATAGAGACTTGCTCAGTTGCTTAGTTGGCGTTTGGAGTCTTCTCACAGTAGAAAAATAT...

XM_057942789.1
GATTATTTCATATTTCTATTACCTTAGTTCCCTCCATCCAAACACAGTCTAACATAGAGACTTGCTCAGTTGCTTAGTTGGCGTTTGGAGTCTTCTCACAGTAGAAAAATATTTTCCCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCTCTCGCATTTCTCGTAGACATCTCAGAGTCCTACTCTCTGATTGTTGGCATAATCCTCTTTAATCTGCCCTAATTTTCTGCGTGCAGTTGTTGTAGCTTGAACTGCGAGTAGA...

CDS

3 records

下载 CDS FASTA

LOC131014719
ATGAATTTTATAGTTGGAGCTTTCAAACCAGCATGCCACATTTCAGTTGCATTCTCAGATGGAAAAAACCGAAAGCAGGTTCCATATAAGAAGGAGAATGGTCAAGCGATAACAGTCCCACTCTTCCAAAGTCAAGATAACATAACAGGCACGATTACTGTTGAACCAGTTTCAGGGAAGAAGGTGGAACACAATGGGATCAAAGTTGAGCTTCTTGGTCAGATAGAAATGTATTTCGACAAAGGCAACTTTTATGACTT...

Protein

3 records

下载 Protein FASTA

XP_057798771.1
MNFIVGAFKPACHISVAFSDGKNRKQVPYKKENGQAITVPLFQSQDNITGTITVEPVSGKKVEHNGIKVELLGQIEMYFDKGNFYDFTSLVRELDVPGEIYERKTFQFEFSTVEMPYETYNGVNVRLRYVLKITISRGYGGSITHFQDFVVWNYTPPPSINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGSNTHVETETLAKFELMDGAPVRGESIPIRLFLSPYELTPT...

XP_057798772.1
MNFIVGAFKPACHISVAFSDGKNRKQVPYKKENGQAITVPLFQSQDNITGTITVEPVSGKKVEHNGIKVELLGQIEMYFDKGNFYDFTSLVRELDVPGEIYERKTFQFEFSTVEMPYETYNGVNVRLRYVLKITISRGYGGSITHFQDFVVWNYTPPPSINNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIIGKIYFLLVRIKIKNMDLEIRRRESTGSGSNTHVETETLAKFELMDGAPVRGESIPIRLFLSPYELTPT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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