Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr03G003885

染色体: Chr03 坐标: 57927137-57928793 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr03G003885
名称SmilChr03G003885
描述cytochrome b5-like
染色体 / SeqIDChr03 / NC_080389.1
坐标与链方向57927137 - 57928793 / +

ID 对照

NCBI Gene IDLOC131014743
GeneID131014743
locus_tag-
NCBI NameLOC131014743
原始查询SmilChr03G003885

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述cytochrome b5-like
产物cytochrome b5-like
ArabidopsisAT5G53560 (CB5-E)
cytochrome B5 isoform E [Source:NCBI gene (formerly Entrezgene);Acc:835438]
identity=64.2; qcov=0.985; evalue=3.44e-59; confidence=high
RiceOs10g0518200
-
identity=61.9; qcov=0.985; evalue=7.97e-58; confidence=high
GOGO:0016020 (membrane); GO:0020037 (heme binding); GO:0043231 (intracellular membrane-bounded organelle)
KEGG-
PfamPF00173 (Cyt-b5)
InterPro-
eggNOG-
NRGeneID:131014743

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057798806.1
2 Endoplasmic reticulum membrane 内质网膜 0.60000 XP_057798806.1
3 Mitochondrion 线粒体 0.20000 XP_057798806.1
4 Mitochondrion membrane 线粒体膜 0.20000 XP_057798806.1
5 Lipid droplet 脂滴 0.20000 XP_057798806.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr3:57927515 C T EMS_canonical_SNV CDS_variant 1 C71
Chr3:57928425 C T EMS_canonical_SNV CDS_variant 2 B123,B14
Chr3:57928550 G A EMS_canonical_SNV CDS_variant 1 C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057798806.1
136 aa
N
1
68
136
Cyt-b5
C
PF00173 Cyt-b5 11-80 aa
XP_057798807.1
136 aa
N
1
68
136
Cyt-b5
C
PF00173 Cyt-b5 11-80 aa
XP_057798808.1
136 aa
N
1
68
136
Cyt-b5
C
PF00173 Cyt-b5 11-80 aa
XP_057798809.1
136 aa
N
1
68
136
Cyt-b5
C
PF00173 Cyt-b5 11-80 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057798806.1 Pfam PF00173 Cyt-b5 Domain 11 80 6.2e-30 103.8 Cytochrome b5-like Heme/Steroid binding domain
XP_057798807.1 Pfam PF00173 Cyt-b5 Domain 11 80 6.2e-30 103.8 Cytochrome b5-like Heme/Steroid binding domain
XP_057798808.1 Pfam PF00173 Cyt-b5 Domain 11 80 6.2e-30 103.8 Cytochrome b5-like Heme/Steroid binding domain
XP_057798809.1 Pfam PF00173 Cyt-b5 Domain 11 80 6.2e-30 103.8 Cytochrome b5-like Heme/Steroid binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057942826.1
GAAGTTGAAATAAATATAGAACTGTCTACAGTCCAGCCTCTGGGGAGGGGTGGGCCCAACGCCGGCAAATGTGAATTTTGAACAAGTTTTAGGACCAATTGTCTGCACAACAACTATATAACCATCGATGATTTCAATACTCCATATTCGCTTCAACTAAAGAGAGAGAGAGAGAGTCAACTGTTCTCTCTCTATTGTGTGACGGAATAATGGCGTCAGATCCGAAAGTTTACTTGTTTGAGGAAGTTGAGAAGCATAAT...
XM_057942823.1
TTGAAATAAATATAGAACTGTCTACAGTCCAGCCTCTGGGGAGGGGTGGGCCCAACGCCGGCAAATGTGAATTTTGAACAAGTTTTAGGACCAATTGTCTGCACAACAACTATATAACCATCGATGATTTCAATACTCCATATTCGCTTCAACTAAAGAGAGAGAGAGAGAGTCAACTGTTCTCTCTCTAGTATAGTAAACTCTTCTCTTGTGTGACGGAATAATGGCGTCAGATCCGAAAGTTTACTTGTTTGAGGAAG...

CDS

4 records

下载 CDS FASTA
LOC131014743
ATGGCGTCAGATCCGAAAGTTTACTTGTTTGAGGAAGTTGAGAAGCATAATAAGGCAAAGGATTGTTGGATCGTTATCAGTGGAAAGGTTTATGATGTGACTCCATTCATGGACGATCATCCTGGAGGTGATGATGTTTTACTAGCAACAACAGGAAAGGATGCAACCGGTGACTTCGAGGATACCGGGCACAGCGACTCTGCTCGCGAAATGAGGGACAAGTATTACATCGGGGAGATAGATCCGGCAACAGTTCCCTT...
LOC131014743
ATGGCGTCAGATCCGAAAGTTTACTTGTTTGAGGAAGTTGAGAAGCATAATAAGGCAAAGGATTGTTGGATCGTTATCAGTGGAAAGGTTTATGATGTGACTCCATTCATGGACGATCATCCTGGAGGTGATGATGTTTTACTAGCAACAACAGGAAAGGATGCAACCGGTGACTTCGAGGATACCGGGCACAGCGACTCTGCTCGCGAAATGAGGGACAAGTATTACATCGGGGAGATAGATCCGGCAACAGTTCCCTT...

Protein

4 records

下载 Protein FASTA
XP_057798806.1
MASDPKVYLFEEVEKHNKAKDCWIVISGKVYDVTPFMDDHPGGDDVLLATTGKDATGDFEDTGHSDSAREMRDKYYIGEIDPATVPLKRIYNPPPRDGSTSNATKASDFMMKNLQVLVPLFILGSAFAVLQYTKVI
XP_057798807.1
MASDPKVYLFEEVEKHNKAKDCWIVISGKVYDVTPFMDDHPGGDDVLLATTGKDATGDFEDTGHSDSAREMRDKYYIGEIDPATVPLKRIYNPPPRDGSTSNATKASDFMMKNLQVLVPLFILGSAFAVLQYTKVI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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