Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003886`

染色体: Chr03 坐标: 57928068-57935594 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003886`
名称	SmilChr03G003886
描述	rab GTPase-activating protein 22-like
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	57928068 - 57935594 / `-`

ID 对照

NCBI Gene ID	`LOC131014742`
GeneID	`131014742`
locus_tag	`-`
NCBI Name	`LOC131014742`
原始查询	`SmilChr03G003886`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	rab GTPase-activating protein 22-like
产物	rab GTPase-activating protein 22-like
Arabidopsis	`AT3G49350` (AT3G49350) Ypt/Rab-GAP domain of gyp1p superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:824097] identity=65.1; qcov=1.01; evalue=0; confidence=high
Rice	`Os09g0528800` - identity=61.6; qcov=0.94; evalue=0; confidence=high
GO	GO:0005096 (GTPase activator activity); GO:0090630 (activation of GTPase activity)
KEGG	-
Pfam	PF00566 (RabGAP-TBC); PF23436 (RabGap-TBC_2)
InterPro	-
eggNOG	-
NR	GeneID:131014742

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057798805.1`
2	Cytosol	细胞质基质	0.80000	`XP_057798805.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057798803.1`
4	Nucleus	细胞核	0.00000	`XP_057798805.1`
5	Chromosome	染色体	0.00000	`XP_057798805.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:57930511`	`T`	`TG`	1bp_insertion	frameshift_variant	1	C2
`Chr3:57930511`	`T`	`TG`	1bp_insertion	CDS_variant	1	C2
`Chr3:57930774`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr3:57930819`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr3:57930909`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A25,B50,B60
`Chr3:57930980`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr3:57931002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr3:57931336`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B22,B64,C13,C72,D1
`Chr3:57931532`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B17,B90,B92
`Chr3:57932790`	`TC`	`T`	1bp_deletion	frameshift_variant	2	C47,C66
`Chr3:57932790`	`TC`	`T`	1bp_deletion	CDS_variant	2	C47,C66
`Chr3:57934771`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B101,B108,B32

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798803.1

580 aa

290

580

RabGAP-TBC

RabGap-TBC_2

PF00566 RabGAP-TBC 319-495 aa PF23436 RabGap-TBC_2 374-493 aa

XP_057798804.1

580 aa

290

580

RabGAP-TBC

RabGap-TBC_2

PF00566 RabGAP-TBC 319-495 aa PF23436 RabGap-TBC_2 374-493 aa

XP_057798805.1

551 aa

276

551

RabGAP-TBC

RabGap-TBC_2

PF00566 RabGAP-TBC 290-466 aa PF23436 RabGap-TBC_2 345-464 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798803.1`	Pfam	`PF00566`	RabGAP-TBC	Family	319	495	2.2e-36	126.3	Rab-GTPase-TBC domain
`XP_057798803.1`	Pfam	`PF23436`	RabGap-TBC_2	Domain	374	493	9.2e-15	55.6	RabGAP TBC domain
`XP_057798804.1`	Pfam	`PF00566`	RabGAP-TBC	Family	319	495	2.2e-36	126.3	Rab-GTPase-TBC domain
`XP_057798804.1`	Pfam	`PF23436`	RabGap-TBC_2	Domain	374	493	9.2e-15	55.6	RabGAP TBC domain
`XP_057798805.1`	Pfam	`PF00566`	RabGAP-TBC	Family	290	466	1.7e-36	126.6	Rab-GTPase-TBC domain
`XP_057798805.1`	Pfam	`PF23436`	RabGap-TBC_2	Domain	345	464	8.3e-15	55.8	RabGAP TBC domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057942821.1
AACTGATAAGGGAGAAAAGCATTGTTTATAGAGGAGAGATTCAGTTTACTCCAAAACTCTAGAGAGAGAAAATAATACATAGATCGCAGAGATAGAGAGAGAAAAGACGAGAGGAAGAAAAAAAAGAAAAATTAAAGAAAAAGAGAGGAGAAAAACAATAAATAGGCCAAACAAAAAAGTGGAAAAAGGAAAGCAAAGTGAAAGAAGGGGAGAGAGGAGAGGGGAAGCATTAAAGCAGTTGCTGTGTATTCAGTTGGTTG...

XM_057942822.1
AAAAGCATTGTTTATAGAGGAGAGATTCAGTTTACTCCAAAACTCTAGAGAGAGAAAATAATACATAGATCGCAGAGATAGAGAGAGAAAAGACGAGAGGAAGAAAAAAAAGAAAAATTAAAGAAAAAGAGAGGAGAAAAACAATAAATAGGCCAAACAAAAAAGTGGAAAAAGGAAAGCAAAGTGAAAGAAGGGGAGAGAGGAGAGGGGAAGCATTAAAGCAGTTGCTGTGTATTCAGTTGGTTGATGGTGGAAAATCA...

CDS

3 records

下载 CDS FASTA

LOC131014742
ATGGTGGAAAATCAACGAGGCGTGTTGCTTCTTCCCAAGGGCAGATTCGTCATTCCGGGCATCCACCCCATGCTTGCCGGCGGCGCCGCGGCGGTCGAAGCCATCGGGAGCAGAATCGGCGAGCTGAGCAGGGTCGTGTTTGTTGGAGGTGGCAGCGGTGGAGGATTCTGGAGGGATGCGGCGGCGAACGGCGGCGTGACCCTCGCCTTCACGGCGTTTGCTGGCCTCGCGTTAGCCGCCGCAGTGTTCTACACTACTAG...

Protein

3 records

下载 Protein FASTA

XP_057798803.1
MVENQRGVLLLPKGRFVIPGIHPMLAGGAAAVEAIGSRIGELSRVVFVGGGSGGGFWRDAAANGGVTLAFTAFAGLALAAAVFYTTSGRLKSPWSRRKRKHILSPQQWRSLFTPDGKLRDNGVKFLKKVRSGGVDPSIRGEVWPFLLGVYDLRSTKEERDTTKAQNRKEYEKLRRQCRRLLKHISEPCKLSENGETSNAGSGSITEGMDSPGSEEVVSARESLSSEETFDNNFDDCRTTSSIMDEYEGSKRITDSNVAFD...

XP_057798804.1
MVENQRGVLLLPKGRFVIPGIHPMLAGGAAAVEAIGSRIGELSRVVFVGGGSGGGFWRDAAANGGVTLAFTAFAGLALAAAVFYTTSGRLKSPWSRRKRKHILSPQQWRSLFTPDGKLRDNGVKFLKKVRSGGVDPSIRGEVWPFLLGVYDLRSTKEERDTTKAQNRKEYEKLRRQCRRLLKHISEPCKLSENGETSNAGSGSITEGMDSPGSEEVVSARESLSSEETFDNNFDDCRTTSSIMDEYEGSKRITDSNVAFD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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