当前解析结果
SmilChr03G003887| 统一新 Gene ID | SmilChr03G003887 |
|---|---|
| 名称 | SmilChr03G003887 |
| 描述 | probable 6-phosphogluconolactonase 4, chloroplastic |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 57952358 - 57953876 / - |
| NCBI Gene ID | LOC131014745 |
|---|---|
| GeneID | 131014745 |
| locus_tag | - |
| NCBI Name | LOC131014745 |
| 原始查询 | SmilChr03G003887 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable 6-phosphogluconolactonase 4, chloroplastic |
| 产物 | probable 6-phosphogluconolactonase 4%2C chloroplastic |
| Arabidopsis | AT5G24400 (EMB2024)NagB/RpiA/CoA transferase-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832511] identity=62.1; qcov=0.881; evalue=6.21e-108; confidence=high |
| Rice | Os09g0529100- identity=62.7; qcov=0.884; evalue=1.41e-109; confidence=high |
| GO | GO:0005975 (carbohydrate metabolic process); GO:0006098 (pentose-phosphate shunt); GO:0017057 (6-phosphogluconolactonase activity) |
| KEGG | smil00030 (Pentose phosphate pathway - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01182 (Glucosamine_iso) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014745 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.40000 | XP_057798810.1 |
| 2 | Peroxisome | 过氧化物酶体 | 0.40000 | XP_057798810.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057798810.1 |
| 4 | Mitochondrion | 线粒体 | 0.20000 | XP_057798810.1 |
| 5 | Mitochondrion intermembrane space | Mitochondrion intermembrane space | 0.20000 | XP_057798810.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:57952543 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | C71 |
Chr3:57952543 |
GA |
G |
1bp_deletion | CDS_variant | 1 | C71 |
Chr3:57952559 |
CA |
C |
1bp_deletion | frameshift_variant | 2 | B12,B55 |
Chr3:57952559 |
CA |
C |
1bp_deletion | CDS_variant | 2 | B12,B55 |
Chr3:57952662 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr3:57952683 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B111,B49,C54,C76,D6 |
Chr3:57952758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B7,B85,C58,C60 |
Chr3:57952764 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B4 |
Chr3:57952767 |
C |
T |
EMS_canonical_SNV | stop_gained | 12 | A1,B10,B102,B105,B133,B74,B9,C30,C34,C45,C6,D4 |
Chr3:57952788 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B90,B92,C49 |
Chr3:57952889 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr3:57952918 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A14,B129,B13,B75,C33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057798810.1PF01182
Glucosamine_iso 46-275 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798810.1 |
Pfam | PF01182 |
Glucosamine_iso | Domain | 46 | 275 | 7.9e-71 | 239.2 | Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。