Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr03G003888`

染色体: Chr03 坐标: 57959709-57961036 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr03G003888`
名称	SmilChr03G003888
描述	ubiquitin-60S ribosomal protein L40
染色体 / SeqID	Chr03 / NC_080389.1
坐标与链方向	57959709 - 57961036 / `+`

ID 对照

NCBI Gene ID	`LOC131014747`
GeneID	`131014747`
locus_tag	`-`
NCBI Name	`LOC131014747`
原始查询	`SmilChr03G003888`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ubiquitin-60S ribosomal protein L40
产物	ubiquitin-60S ribosomal protein L40
Arabidopsis	`AT2G36170` (AT2G36170) 60S ribosomal protein L40-1 [Source:NCBI gene (formerly Entrezgene);Acc:818189] identity=99.2; qcov=1; evalue=5.62e-92; confidence=high
Rice	`Os09g0452700` - identity=80.6; qcov=1.05; evalue=1.21e-75; confidence=high
GO	GO:0003735 (structural constituent of ribosome); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005840 (ribosome); GO:0006412 (translation); GO:0016567 (protein ubiquitination); GO:0019941 (modification-dependent protein catabolic process); GO:0031386 (protein tag activity); GO:0031625 (ubiquitin protein ligase binding)
KEGG	smil03010 (Ribosome - Salvia miltiorrhiza (redroot sage)); smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00240 (ubiquitin); PF01020 (Ribosomal_L40e); PF11976 (Rad60-SLD); PF14560 (Ubiquitin_2)
InterPro	-
eggNOG	-
NR	GeneID:131014747

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057798814.1`
2	Cytosol	细胞质基质	1.00000	`XP_057798814.1`
3	Nucleus	细胞核	0.80000	`XP_057798815.1`
4	Nucleoplasm	核质	0.40000	`XP_057798815.1`
5	Chromosome	染色体	0.00000	`XP_057798814.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr3:57959885`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A2,C26,C64,C66,D5
`Chr3:57959906`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr3:57959939`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B25
`Chr3:57960097`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A20,B29,C16
`Chr3:57960148`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr3:57960271`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr3:57960698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B111,B49,C54,C76,D6
`Chr3:57960942`	`GA`	`G`	1bp_deletion	frameshift_variant	12	A25,B104,B136,B37,B51,B79,B96,C23,C46,C78,D4,D6
`Chr3:57960947`	`C`	`CTA`	2bp_insertion	frameshift_variant	19	A23,A25,B104,B129,B130,B136,B37,B48,B49,B51,B79,B96,C23,C31,C39,C46,C78,D4,D6
`Chr3:57960949`	`A`	`AT`	1bp_insertion	frameshift_variant	2	B49,B78
`Chr3:57960949`	`A`	`AT`	1bp_insertion	CDS_variant	2	B49,B78

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057798814.1

183 aa

183

Rad60-SLD

ubiquitin

Ribosomal_L40e

PF11976 Rad60-SLD 1-71 aa PF00240 ubiquitin 3-74 aa PF01020 Ribosomal_L40e 78-122 aa

XP_057798815.1

128 aa

128

Rad60-SLD

ubiquitin

Ubiquitin_2

Ribosomal_L40e

PF11976 Rad60-SLD 1-71 aa PF00240 ubiquitin 3-74 aa PF14560 Ubiquitin_2 11-69 aa PF01020 Ribosomal_L40e 78-127 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057798814.1`	Pfam	`PF11976`	Rad60-SLD	Family	1	71	1.2e-17	64.1	Ubiquitin-2 like Rad60 SUMO-like
`XP_057798814.1`	Pfam	`PF00240`	ubiquitin	Domain	3	74	2.1e-32	111.4	Ubiquitin family
`XP_057798814.1`	Pfam	`PF01020`	Ribosomal_L40e	Domain	78	122	1.6e-27	95.9	Ribosomal L40e family
`XP_057798815.1`	Pfam	`PF11976`	Rad60-SLD	Family	1	71	6.6e-18	65.0	Ubiquitin-2 like Rad60 SUMO-like
`XP_057798815.1`	Pfam	`PF00240`	ubiquitin	Domain	3	74	1e-32	112.4	Ubiquitin family
`XP_057798815.1`	Pfam	`PF14560`	Ubiquitin_2	Domain	11	69	5.8e-05	24.2	Ubiquitin-like domain
`XP_057798815.1`	Pfam	`PF01020`	Ribosomal_L40e	Domain	78	127	1.4e-31	108.9	Ribosomal L40e family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057942832.1
ATTGGCTAAACGACGTCGTATAAGGGTCGAAGCAACCCAAAACCCTAAATGGATCCTGATATATAAACAACGCAGCAGCTGTTTGCATCACTCTAAATCTCTTCTGGAGAGCGCCGAACACGATAAGAAAAAATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACGCTCGAGGTTGAATCGAGCGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGAATCCCACCGGACCAGCAGCGTTT...

XM_057942831.1
CTGATATATAAACAACGCAGCAGCTGTTTGCATCACTCTAAATCTCTTCTGGAGAGCGCCGAACACGATAAGAAAAAATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACGCTCGAGGTTGAATCGAGCGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGAATCCCACCGGACCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAAGATGGCCGGACCCTAGCTGATTACAACATC...

CDS

2 records

下载 CDS FASTA

LOC131014747
ATGCAGATCTTCGTCAAGACGCTCACCGGGAAAACCATCACGCTCGAGGTTGAATCGAGCGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGAATCCCACCGGACCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAAGATGGCCGGACCCTAGCTGATTACAACATCCAGAAAGAGTCGACTCTGCATTTGGTCCTGAGGCTTAGGGGGGGTATCATTGAGCCTTCGCTTATGGCATTGGCCAG...

Protein

2 records

下载 Protein FASTA

XP_057798814.1
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQVCSMMYSWRIYATQLTKSIIDIQMFQTCLCAVEAEEEDQVDCWIGRLSCCHFVPSTLVIANEN

XP_057798815.1
MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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