当前解析结果
SmilChr03G003895| 统一新 Gene ID | SmilChr03G003895 |
|---|---|
| 名称 | SmilChr03G003895 |
| 描述 | cytochrome P450 77A2-like |
| 染色体 / SeqID | Chr03 / NC_080389.1 |
| 坐标与链方向 | 58050988 - 58052958 / - |
| NCBI Gene ID | LOC131014752 |
|---|---|
| GeneID | 131014752 |
| locus_tag | - |
| NCBI Name | LOC131014752 |
| 原始查询 | SmilChr03G003895 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 77A2-like |
| 产物 | cytochrome P450 77A2-like |
| Arabidopsis | AT5G04660 (CYP77A4)cytochrome P450, family 77, subfamily A, polypeptide 4 [Source:NCBI gene (formerly Entrezgene);Acc:830343] identity=64; qcov=1.01; evalue=0; confidence=high |
| Rice | Os04g0407900- identity=56.5; qcov=0.915; evalue=0; confidence=high |
| GO | GO:0005506 (iron ion binding); GO:0016020 (membrane); GO:0016709 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen); GO:0020037 (heme binding) |
| KEGG | smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131014752 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057798820.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057798820.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057798820.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057798820.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057798820.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr3:58051216 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B65,B95,C50 |
Chr3:58051351 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A6,B31,C25 |
Chr3:58051387 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B136,B46,C83 |
Chr3:58051461 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr3:58051470 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr3:58051594 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
Chr3:58051651 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,B12,C45 |
Chr3:58051674 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr3:58051696 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr3:58051753 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr3:58051765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr3:58051767 |
AG |
A |
1bp_deletion | frameshift_variant | 121 | A10,A11,A13,A15,A16,A18,A19,A25,A3,A4,A5,B1,B101,B103,B105,B107,B108,B11,B110,B112,B114,B121,B122,B124,B125,B127,B133,B136,B138,B140,B16,B17,B18,B19,B20,B21,B22,B24,B25,B28,B31,B32,B33,B34,B35,B36,B37,B38,B39,B40,B45,B5,B56,B57,B59,B6,B60,B62,B67,B69,B7,B75,B76,B78,B80,B82,B86,B87,B9,B90,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C11,C14,C18,C19,C20,C21,C23,C24,C26,C33,C35,C36,C39,C4,C40,C43,C46,C49,C51,C53,C55,C58,C60,C61,C62,C63,C67,C69,C7,C70,C71,C73,C78,C79,C8,C80,C83,C85,C86,C9,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057798820.1PF00067
p450 38-493 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057798820.1 |
Pfam | PF00067 |
p450 | Domain | 38 | 493 | 3e-108 | 363.3 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。